X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimoligos.h;h=d72b8146d36bc659ec13ddffc28463ef4a7b8204;hb=567e4bca5d62bd8ea316ce5def320d070d7507b8;hp=8aa44bdd365356f195069e4f11528300844fbc7a;hpb=eb71e28b7b7afd82540f4a8f0bac9429c5b9d713;p=mothur.git

diff --git a/trimoligos.h b/trimoligos.h
index 8aa44bd..d72b814 100644
--- a/trimoligos.h
+++ b/trimoligos.h
@@ -50,6 +50,11 @@ class TrimOligos {
     
         bool stripSpacer(Sequence&);
         bool stripSpacer(Sequence&, QualityScores&);
+    
+        //seq, primerStart, primerEnd
+        bool findForward(Sequence&, int&, int&);
+        bool findReverse(Sequence&, int&, int&);
+    
 				
 	
 	private: