X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimflowscommand.h;h=b7fbf4342b821d1f6eb6dbb7094d94c3e85d19a3;hb=d71a31a60542608595ce1278cc4a3398479cec7f;hp=2594815f6b763a303382f9730bce36e84060b713;hpb=57b3c96832667c1b70d4d526331f52e3d49e8237;p=mothur.git diff --git a/trimflowscommand.h b/trimflowscommand.h index 2594815..b7fbf43 100644 --- a/trimflowscommand.h +++ b/trimflowscommand.h @@ -26,6 +26,7 @@ public: vector setParameters(); string getCommandName() { return "trim.flows"; } string getCommandCategory() { return "Sequence Processing"; } + string getOutputFileNameTag(string, string); string getHelpString(); string getCitation() { return "http://www.mothur.org/wiki/Trim.flows"; } string getDescription() { return "trim.flows"; } @@ -67,7 +68,6 @@ private: string flowFileName, oligoFileName, outputDir; - map barcodes; map primers; vector revPrimer;