X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trimflowscommand.cpp;h=5800cde2146f108ae6efc3d1bce50b9bb9913750;hb=aca78ed4a47dff8672ea8fd93cef0dfbaf0f7495;hp=33349decab52e90be19c928b44b9b07c8f6c710a;hpb=a2cde58c1e72199498a2142983ef040dce36da10;p=mothur.git

diff --git a/trimflowscommand.cpp b/trimflowscommand.cpp
index 33349de..5800cde 100644
--- a/trimflowscommand.cpp
+++ b/trimflowscommand.cpp
@@ -825,7 +825,7 @@ int TrimFlowsCommand::createProcessesCreateTrim(string flowFileName, string trim
 		
 		//loop through and create all the processes you want
 		while (process != processors) {
-			int pid = fork();
+			pid_t pid = fork();
 			
 			if (pid > 0) {
 				processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
@@ -837,7 +837,7 @@ int TrimFlowsCommand::createProcessesCreateTrim(string flowFileName, string trim
 					for(int i=0;i<tempBarcodePrimerComboFileNames.size();i++){
 						for(int j=0;j<tempBarcodePrimerComboFileNames[0].size();j++){
                             if (tempBarcodePrimerComboFileNames[i][j] != "") {
-                                tempBarcodePrimerComboFileNames[i][j] += toString(getpid()) + ".temp";
+                                tempBarcodePrimerComboFileNames[i][j] += m->mothurGetpid(process) + ".temp";
                                 ofstream temp;
                                 m->openOutputFile(tempBarcodePrimerComboFileNames[i][j], temp);
                                 temp.close();
@@ -846,9 +846,9 @@ int TrimFlowsCommand::createProcessesCreateTrim(string flowFileName, string trim
 					}
 				}
 				driverCreateTrim(flowFileName,
-								 (trimFlowFileName + toString(getpid()) + ".temp"),
-								 (scrapFlowFileName + toString(getpid()) + ".temp"),
-								 (fastaFileName + toString(getpid()) + ".temp"),
+								 (trimFlowFileName + m->mothurGetpid(process) + ".temp"),
+								 (scrapFlowFileName + m->mothurGetpid(process) + ".temp"),
+								 (fastaFileName + m->mothurGetpid(process) + ".temp"),
 								 tempBarcodePrimerComboFileNames, lines[process]);
 
 				exit(0);