X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=trialSwap2.cpp;fp=trialSwap2.cpp;h=4cff4260ad5754fb4c0347747d20d0439df3f5d6;hb=b8a1ac74d3d4f9cd53f2a98cc6ea95f50860044b;hp=71c3027db2c8bbe97265cb40af839c6a81a17b33;hpb=16f9c4ab6f39769856b13e048eae2c8eaa413c02;p=mothur.git

diff --git a/trialSwap2.cpp b/trialSwap2.cpp
index 71c3027..4cff426 100644
--- a/trialSwap2.cpp
+++ b/trialSwap2.cpp
@@ -50,9 +50,10 @@ double TrialSwap2::calc_c_score (vector<vector<int> > &co_matrix, vector<int> ro
             }
         }
         
-        cscore = cscore/(double)(nrows*(nrows-1)/2);
+        //cscore = cscore/(double)(nrows*(nrows-1)/2);  //not normalized
         //cout << "normalized c score: " << normcscore/nonzeros << endl;
-        
+        cscore = normcscore/(double)nonzeros;
+
         return cscore;
     }
     catch(exception& e) {