X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=treemap.h;fp=treemap.h;h=fc9c3690fef8900ad3484147ae3fa0487a514b73;hb=03dca3b32a903c3f29fbcf5b410b19d6ab6dae63;hp=7ed8d04f0886367f5a17a5baeec4848e75687358;hpb=22e2ebf2ee6462b0a828deed0499124975ede6e5;p=mothur.git

diff --git a/treemap.h b/treemap.h
index 7ed8d04..fc9c369 100644
--- a/treemap.h
+++ b/treemap.h
@@ -42,13 +42,19 @@ public:
 		sort(namesOfGroups.begin(), namesOfGroups.end());
 		return namesOfGroups;
 	}
-	vector<string> namesOfSeqs;
-    map<string,int> seqsPerGroup;	//groupname, number of seqs in that group.
-	map<string, GroupIndex> treemap; //sequence name and <groupname, vector index>
-	void print(ostream&);
+    
+    void print(ostream&);
 	void makeSim(vector<string>);  //takes groupmap info and fills treemap for use by tree.shared command.
 	void makeSim(ListVector*);  //takes listvector info and fills treemap for use by tree.shared command.	
-	
+    vector<string> getNamesSeqs();
+	vector<string> getNamesSeqs(vector<string>); //get names of seqs belonging to a group or set of groups
+    int getCopy(TreeMap*);
+    
+    vector<string> namesOfSeqs;
+    map<string,int> seqsPerGroup;	//groupname, number of seqs in that group.
+	map<string, GroupIndex> treemap; //sequence name and <groupname, vector index>
+
+    
 private:
 	vector<string> namesOfGroups;
 	ifstream fileHandle;