X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=treemap.cpp;h=fee309c5877138039c2ecdff8f54428a8060bc24;hb=2e5ec5cbbd23637ed20da9bdd544d178a3b5d949;hp=9eb8330ad1917a26441b8c22527b50652dbd011a;hpb=d0939d3ab83988cc068f9ebe60596cf5decb65e5;p=mothur.git

diff --git a/treemap.cpp b/treemap.cpp
index 9eb8330..fee309c 100644
--- a/treemap.cpp
+++ b/treemap.cpp
@@ -72,7 +72,13 @@ string TreeMap::getGroup(string sequenceName) {
 }
 /************************************************************/
 void TreeMap::setIndex(string seq, int index) {
-	treemap[seq].vectorIndex = index;
+	it = treemap.find(seq);
+	if (it != treemap.end()) { //sequence name was in group file
+		treemap[seq].vectorIndex = index;	
+	}else {
+		treemap[seq].vectorIndex = index;
+		treemap[seq].groupname = "not found";
+	}
 }
 /************************************************************/
 int TreeMap::getIndex(string seq) {