X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=treegroupscommand.h;h=b29670ae614205a7ee286116379ddda86f0e7cf9;hb=9b53f130ac9af5e95444ce2e817fce25ed19ff03;hp=6790afb73984377c1aba8f6488a3cf1c2e544280;hpb=28bcfc4a41b8b82f66636587e0d4d355d07cbdd1;p=mothur.git

diff --git a/treegroupscommand.h b/treegroupscommand.h
index 6790afb..b29670a 100644
--- a/treegroupscommand.h
+++ b/treegroupscommand.h
@@ -15,7 +15,7 @@
 #include "groupmap.h"
 #include "validcalculator.h"
 #include "tree.h"
-#include "treemap.h"
+#include "counttable.h"
 #include "readmatrix.hpp"
 #include "readcolumn.h"
 #include "readphylip.h"
@@ -104,13 +104,13 @@ private:
 	
 	NameAssignment* nameMap;
 	ListVector* list;
-	TreeMap* tmap;
+	CountTable* ct;
 	Tree* t;
     InputData* input;
 	vector<Calculator*> treeCalculators;
 	vector<SharedRAbundVector*> lookup;
 	string lastLabel;
-	string format, groupNames, filename, sharedfile, inputfile;
+	string format, groupNames, filename, sharedfile, countfile, inputfile;
 	int numGroups, subsampleSize, iters, processors;
 	ofstream out;
 	float precision, cutoff;