X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=treegroupscommand.h;fp=treegroupscommand.h;h=c61c9fbfa63bf84a2482955ca20aa914f89b9400;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=3e8fbb01c4df3c34540a11342a5a960a03788145;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/treegroupscommand.h b/treegroupscommand.h
index 3e8fbb0..c61c9fb 100644
--- a/treegroupscommand.h
+++ b/treegroupscommand.h
@@ -35,7 +35,12 @@ class TreeGroupCommand : public Command {
 	
 public:
 	TreeGroupCommand(string);	
+	TreeGroupCommand();
 	~TreeGroupCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();	
 	void help();
 	
@@ -64,6 +69,7 @@ private:
 	int numGroups;
 	ofstream out;
 	float precision, cutoff;
+	map<string, vector<string> > outputTypes;
 
 	bool abort, allLines;
 	set<string> labels; //holds labels to be used