X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=treegroupscommand.cpp;h=582a3233ae847f64bc74209e14c918d2b6ebdc45;hb=ec1b5bc7460ac8ad40f54f0729900d9ed98e7292;hp=5d7df3440439c469f3311073d2237b87272e79e6;hpb=1d898dc6edaf9e9f287fab53bf1f21fb29757a17;p=mothur.git

diff --git a/treegroupscommand.cpp b/treegroupscommand.cpp
index 5d7df34..582a323 100644
--- a/treegroupscommand.cpp
+++ b/treegroupscommand.cpp
@@ -125,6 +125,7 @@ TreeGroupCommand::TreeGroupCommand(string option)  {
 		
 		//allow user to run help
 		if(option == "help") { help(); abort = true; calledHelp = true; }
+		else if(option == "citation") { citation(); abort = true; calledHelp = true;}
 		
 		else {
 			vector<string> myArray = setParameters();
@@ -247,6 +248,11 @@ TreeGroupCommand::TreeGroupCommand(string option)  {
 				 if (calc == "default")  {  calc = "jclass-thetayc";  }
 			}
 			m->splitAtDash(calc, Estimators);
+			if (m->inUsersGroups("citation", Estimators)) { 
+				ValidCalculators validCalc; validCalc.printCitations(Estimators); 
+				//remove citation from list of calcs
+				for (int i = 0; i < Estimators.size(); i++) { if (Estimators[i] == "citation") {  Estimators.erase(Estimators.begin()+i); break; } }
+			}
 
 			string temp;
 			temp = validParameter.validFile(parameters, "precision", false);			if (temp == "not found") { temp = "100"; }