X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=taxonomyequalizer.h;fp=taxonomyequalizer.h;h=9f38b2f2a29756d751f10b6b8e97b4cc3925bd00;hb=bee7952bbdc4ed46c7a12bef11769345fa3224d7;hp=6308d7168e72651f349ab3bf0a28942949063f62;hpb=7a2154809d332281cf4006943a9bd94b8208c837;p=mothur.git diff --git a/taxonomyequalizer.h b/taxonomyequalizer.h index 6308d71..9f38b2f 100644 --- a/taxonomyequalizer.h +++ b/taxonomyequalizer.h @@ -25,13 +25,14 @@ public: TaxEqualizer(string, int); ~TaxEqualizer() {}; - string getEqualizedTaxFile() { return equalizedFile; } + string getEqualizedTaxFile() { return equalizedFile; } + int getHighestLevel() { return highestLevel; } private: string equalizedFile, testTax; bool containsConfidence; - int cutoff; + int cutoff, highestLevel; map seqLevels; //maps name to level of taxonomy int getHighestLevel(ifstream&); //scans taxonomy file to find taxonomy with highest level