X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=systemcommand.h;h=6dc09ef75690b43eb0e5045788308c1a4d26d93b;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hp=3c22773f2d9e70417c6dc3fef6a58181a16440f0;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git diff --git a/systemcommand.h b/systemcommand.h index 3c22773..6dc09ef 100644 --- a/systemcommand.h +++ b/systemcommand.h @@ -24,9 +24,11 @@ class SystemCommand : public Command { vector setParameters(); string getCommandName() { return "system"; } string getCommandCategory() { return "General"; } - string getHelpString(); + string getOutputFileNameTag(string, string) { return ""; } + string getHelpString(); string getCitation() { return "http://www.mothur.org/wiki/System"; } - + string getDescription() { return "execute system commands from within mothur"; } + int execute(); void help() { m->mothurOut(getHelpString()); }