X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=systemcommand.h;fp=systemcommand.h;h=3b48642aeec3b1cb5e4fc9e1a24d152d09dccc94;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=410a12e7657a1c0625281429e261a519dccf45ef;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/systemcommand.h b/systemcommand.h
index 410a12e..3b48642 100644
--- a/systemcommand.h
+++ b/systemcommand.h
@@ -18,13 +18,20 @@ class SystemCommand : public Command {
 	public:
 	
 		SystemCommand(string);	
-		~SystemCommand(){};
+		SystemCommand() {}
+		~SystemCommand(){}
+		vector<string> getRequiredParameters();
+		vector<string> getValidParameters();
+		vector<string> getRequiredFiles();
+		map<string, vector<string> > getOutputFiles() { return outputTypes; }
 		int execute();
 		void help();	
 		
 	private:
 		string command;
 		bool abort;
+		vector<string> outputNames;
+		map<string, vector<string> > outputTypes;
 		
 };