X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=survey%2Fmakestats;h=c67a3ad72cca630a895c8eab704c6897ff551e20;hb=HEAD;hp=0a790547e88d94848a117e5f6ee179bda7f81abf;hpb=2db0453e5c3508367bf56eecaeb7758d11e49272;p=neurodebian.git diff --git a/survey/makestats b/survey/makestats index 0a79054..c67a3ad 100755 --- a/survey/makestats +++ b/survey/makestats @@ -1,6 +1,6 @@ #!/usr/bin/python +# emacs: -*- coding: utf-8; mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*- -from mvpa.misc.plot.base import plot_bars from glob import glob try: from json import load as jload @@ -15,6 +15,14 @@ import pylab as pl import numpy as np import time +from common import entries_to_refresh +fresh_keys = [k + for k, (regex, b) in + reduce(list.__add__,[x.items() + for x in entries_to_refresh['sw_other_name'].values()], + []) + if b] + # uniform colors for OS results os_colors = ['#AA2029', '#D1942B', '#7FB142', '#69A7CE'] os_order = ['linux', 'mac', 'win', 'otheros'] @@ -153,13 +161,18 @@ class DB(dict): missing += 1 return val, missing - def get_counts(self, key): + def get_counts(self, key, predef_keys=None): # return a dict with field values as keys and respective submission # count as value vals = self.get_not_none(key)[0] uniq = np.unique(vals) counts = dict(zip(uniq, [vals.count(u) for u in uniq])) - return counts + if not predef_keys is None: + ret = dict(zip(predef_keys, [0] * len(predef_keys))) + else: + ret = {} + ret.update(counts) + return ret def select_match(self, key, values): # return a db with all submissions were a field id has one of the @@ -176,16 +189,33 @@ class DB(dict): match[k] = v return match + def select_match_exactly(self, key, values): + # return a db with all submissions were a field id has value + # equal to the supplied + match = DB(None) + set_values = set(values) + for k, v in self.items(): + if not key in v: + continue + el = v[key] + if isinstance(el, list): + if set(el) == set_values: + match[k] = v + elif set([el]) == set_values: + match[k] = v + return match + def get_nice_name(self, id): srcs = [DB.os_dict, os_cat_names, DB.sw_dict, sw_categories, resource_categories, time_categories, DB.datamod_dict, DB.position_dict, DB.employer_dict, DB.vm_dict, DB.ratings_dict] + suffix = u'$^†$' if id in fresh_keys else '' for src in srcs: if id in src: - return src[id] + return src[id] + suffix # not found, nothing nicer - return id + return id + suffix def mkpic_os_per_env(db, destdir): @@ -216,6 +246,7 @@ def mkpic_os_per_env(db, destdir): pl.legend(loc='center left') pl.yticks(x + 0.4, env_names[::-1]) pl.ylim(-0.25, len(envs)) + pl.xlim(0,1) pl.title("Operating system preference by environment") pl.xlabel("Fraction of submissions") pl.subplots_adjust(left=0.15, right=0.97) @@ -238,12 +269,12 @@ def mkpic_time_per_env(db, destdir): x = np.arange(len(envs)) bottoms = np.zeros(len(envs)) for i, t in enumerate(time_order): - stat = [env_stats[e][t] for e in envs] + stat = [env_stats[e][t] for e in envs[::-1]] pl.barh(x, stat, left=bottoms, color=time_colors[i], label=db.get_nice_name(t), height=.6) bottoms += stat - pl.legend(loc='center left') - pl.yticks(x + 0.2, env_names) + pl.legend(loc='lower left') + pl.yticks(x + 0.2, env_names[::-1]) pl.ylim(-0.4, len(envs)) pl.title("Research activity time by environment") pl.xlabel("Fraction of submissions") @@ -277,7 +308,7 @@ def mkpic_submissions_per_key(db, destdir, key, title, sortby='name', pl.yticks(x + 0.5, ['' for s in stats]) text_offset = pl.gca().get_xlim()[1] / 30. for i, s in enumerate(stats[::-1]): - pl.text(text_offset, i+.5, db.get_nice_name(s[0]), + pl.text(text_offset, i+.5, db.get_nice_name(s[0]) + " [%d]" % (s[1],), horizontalalignment='left', verticalalignment='center', bbox=dict(facecolor='white', alpha=0.8, edgecolor='white')) @@ -297,6 +328,8 @@ def mkpic_software(db, destdir): sortby='count') def mkpic_rating_by_os(db, env, items, destdir, title): + from mvpa.misc.plot.base import plot_bars + pl.figure(figsize=(6.4, 4.8)) for i, os in enumerate(os_order): ratings = [db.select_match(env, @@ -312,13 +345,19 @@ def mkpic_rating_by_os(db, env, items, destdir, title): pl.legend(loc='lower right') pl.savefig('%s/ratings_%s.png' % (destdir, env), format='png', dpi=80) -def mkpic_rating_by_os_hor_joined(db, env, items, destdir, title, - intro_sentence="I agree with the statements"): - per_os_width = 10 - max_rating = 4 +def mkpic_rating_by_os_hor_joined(db, env, items, destdir='.', title=None, + intro_sentence="I agree with the statements", + suffix='', max_rating=4): + per_os_width = 1 #pl.figure(figsize=(6.4, 4.8)) + if max_rating is None: + assert(len(items) == 1) + # We need to query for it + field = items[0] + max_rating = np.max([db[k][field] for k in db if field in db[k]]) + 1 + print "max ", max_rating nos = len(os_order) - rst = open('figures/ratings_%s.rst' % env, 'w') + rst = open('figures/ratings_%s%s.rst' % (env, suffix), 'w') rst.write(""" %s @@ -340,21 +379,22 @@ def mkpic_rating_by_os_hor_joined(db, env, items, destdir, title, for i, os in enumerate(os_order): ratings = np.array(db.select_match(env, os_family[os]).get_not_none('%s' % (it,))[0]) - # assume that we have 4 grades from 0 to 3 - if len(ratings): - assert(max(ratings) < max_rating) + #if len(ratings): + # assert(max(ratings) < max_rating) # Complement with errorbar if len(ratings): + scaling = float(per_os_width)/(max_rating-1) meanstat = np.mean(ratings) - meanstat_point = per_os_width * (float(meanstat))/(max_rating-1) + meanstat_point = scaling * meanstat # standard error of estimate - errstat = len(ratings) > 1 and np.std(ratings)/np.sqrt(len(ratings)-1) or 0 - + errstat_point = len(ratings) > 1 and scaling*np.std(ratings)/np.sqrt(len(ratings)-1) or 0 + #print ratings, meanstat, meanstat_point, errstat_point if True: # Beautiful piece not yet appreciated by the audience total = len(ratings) bottom = 0 - for r in range(max_rating): + max_rating_max = max(max_rating, max(ratings)+1) + for r in sorted(set(ratings)):#range(max_rating_max): stat = np.sum(ratings == r) * meanstat_point / float(total) #print r, it, os, stat, total #if it == "pers_r8" and os == "linux" and r == 3: @@ -362,7 +402,7 @@ def mkpic_rating_by_os_hor_joined(db, env, items, destdir, title, kwargs = dict(label=None) if stat: pl.barh(1.0/nos * (nos - 1 - i), stat, left=bottom, color=os_colors[i], - height=.25, alpha=0.25 + r/float(max_rating), + height=.25, alpha=1./max_rating_max + r/float(max_rating_max), label=None, edgecolor=os_colors[i]) bottom += stat @@ -371,9 +411,9 @@ def mkpic_rating_by_os_hor_joined(db, env, items, destdir, title, color=os_colors[i], height=.25, alpha=1.0, label=None) pl.errorbar([meanstat_point], [1.0/nos * (nos - 0.5 - i)], - xerr=[errstat], fmt='o', color=os_colors[i], ecolor='k') + xerr=[errstat_point], fmt='o', color=os_colors[i], ecolor='k') pl.xlim((0, per_os_width)) - if k == 0: + if k == 0 and max_rating == 4: # ad-hoc: only for those disagree/agree pl.text(0, 1.1, "Disagree", horizontalalignment='left') pl.text(per_os_width, 1.1, "Agree", horizontalalignment='right') pl.ylim((0, 1.5)) @@ -382,7 +422,7 @@ def mkpic_rating_by_os_hor_joined(db, env, items, destdir, title, pl.axis('off') pl.subplots_adjust(left=0.00, right=1., bottom=0.0, top=1, wspace=0.05, hspace=0.05) - fname = '%s/ratings_%s_%s.png' % (destdir, env, it) + fname = '%s/ratings_%s_%s%s.png' % (destdir, env, it, suffix) pl.savefig(fname, format='png', dpi=80) pl.close() oddrow_s = k % 2 == 0 and ' class="oddrow"' or '' @@ -402,6 +442,29 @@ def mkpic_rating_by_os_hor_joined(db, env, items, destdir, title, def main(srcdir, destdir): db = DB(srcdir) + if False: + ## Plot maintenance time per each group + # assess what would be our range + pmts, _ = db.get_not_none('pers_maint_time') + max_rating = int(np.mean(pmts) + np.std(pmts)) + for pos in db.get_unique('bg_position'): + print pos + mkpic_rating_by_os_hor_joined(db.select_match('bg_position', pos), + 'pers_os', ['pers_maint_time'], destdir, + "Personal environment", "", suffix='_maint_time_%s' % pos, + max_rating=max_rating) + + ## db2 = db + # custom selection for people dealing more with hardware + # any electrophys + ## db = db2.select_match('bg_datamod', (('ephys'),)) + # or only selected ones (so no fmri/pet etc) + ## db = db2.select_match_exactly('bg_datamod', (('ephys'), ('behav'),)) + ## db.update(db2.select_match_exactly('bg_datamod', (('ephys'),))) + ## db.update(db2.select_match_exactly('bg_datamod', (('ephys'), ('genetic'),))) + ## db.update(db2.select_match_exactly('bg_datamod', (('ephys'), ('simulation'),))) + ## db.update(db2.select_match_exactly('bg_datamod', (('ephys'), ('meeg'),))) + if not os.path.exists(destdir): os.makedirs(destdir) @@ -427,12 +490,20 @@ def main(srcdir, destdir): for pic in [mkpic_os_per_env, mkpic_software, mkpic_time_per_env]: pic(db, destdir) + + mkpic_rating_by_os_hor_joined(db, 'pers_os', ['pers_r%i' % i for i in range(1, 9)], destdir, "Personal environment", "I prefer this particular scientific software environment because ...") - mkpic_rating_by_os_hor_joined(db, 'man_os', ['man_r%i' % i for i in range(1, 5)], destdir, + mkpic_rating_by_os_hor_joined(db, 'man_os', ['man_r%i' % i for i in range(1, 6)], destdir, "Managed environment") - mkpic_rating_by_os_hor_joined(db, 'virt_host_os', ['virt_r%i' % i for i in range(1, 4)], destdir, + mkpic_rating_by_os_hor_joined(db, 'virt_host_os', ['virt_r%i' % i for i in range(1, 5)], destdir, "Virtual environment (by host OS)") + mkpic_rating_by_os_hor_joined(db, 'virt_guest_os', ['virt_r%i' % i for i in range(1, 5)], destdir, + "Virtual environment (by guest OS)") + + ## mkpic_rating_by_os_hor_joined(db.select_match('virt_prod', (('vmware'),)), + ## 'virt_host_os', ['virt_r%i' % i for i in range(1, 5)], destdir, + ## "Virtualbox virtual environment (by host OS)") # submission stats: this is RST statsfile = open('%s/stats.txt' % destdir, 'w') @@ -443,3 +514,4 @@ def main(srcdir, destdir): if __name__ == '__main__': main(sys.argv[1], sys.argv[2]) + #main('dataout', 'figures')