X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=summarysharedcommand.h;h=e87e75e6412a36239f3c1b1e19066609aaef4527;hb=154e089bcd37c2c2f773e53ffb88a20170b27037;hp=0e3428d35721d19573153f04a4e19cd693cca6f3;hpb=bfbc55964f1977da72c2cea984288a427d370a59;p=mothur.git

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index 0e3428d..e87e75e 100644
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -14,9 +14,10 @@
 #include "sharedrabundvector.h"
 #include "inputdata.h"
 #include "calculator.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 #include "sharedlistvector.h"
 #include "validcalculator.h"
+#include "sharedutilities.h"
 
 /*The summary.shared() command
 	The summary.shared command can only be executed after a successful read.shared command. 
@@ -43,17 +44,15 @@ public:
 	int execute();
 	
 private:
-	void getSharedVectors();
-	
 	GlobalData* globaldata;
-	ReadMatrix* read;
+	ReadOTUFile* read;
+	SharedUtil* util;
 	vector<Calculator*> sumCalculators;	
 	InputData* input;
 	ValidCalculators* validCalculator;
 	SharedListVector* SharedList;
 	SharedOrderVector* order;
 	vector<SharedRAbundVector*> lookup;
-	SharedRAbundVector* shared1, shared2;
 	string outputFileName, format;
 	ofstream outputFileHandle;