X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=summarysharedcommand.h;h=bcd8ab671f2727331179dbe3511d4acd72f72417;hb=2431fce75705f16d6d7cab7a6f5fe02051d82ca5;hp=63197e199493aba98106c43378340e4e394fdda1;hpb=d2fc851cdaf57874b3ac8261b220fad35750daad;p=mothur.git

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index 63197e1..bcd8ab6 100644
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -34,14 +34,14 @@ private:
 	InputData* input;
 	ValidCalculators* validCalculator;
 	
-	bool abort, allLines, mult;
+	bool abort, allLines, mult, all;
 	set<string> labels; //holds labels to be used
 	string label, calc, groups;
-	vector<string>  Estimators, Groups;
+	vector<string>  Estimators, Groups, outputNames;
 	vector<SharedRAbundVector*> lookup;
-	string outputFileName, format, outAllFileName;
+	string outputFileName, format, outAllFileName, outputDir;
 	ofstream outputFileHandle, outAll;
-	void process(vector<SharedRAbundVector*>);
+	int process(vector<SharedRAbundVector*>);
 
 };