X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=summarysharedcommand.h;h=b99e0f037206496f788635fa7d8a6ce21958d56b;hb=7588ff51d365aad66f455694afb90b6fd3e6639a;hp=090c9f4ef9ed40287040bec733f0e5d8802ff23d;hpb=7b3c9ca940891c1b20b3b7ec13e05d7e7b316b63;p=mothur.git

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index 090c9f4..b99e0f0 100644
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -28,6 +28,11 @@ public:
 	void help();
 	
 private:
+	struct linePair {
+		int start;
+		int end;
+	};
+	vector<linePair> lines;
 	GlobalData* globaldata;
 	ReadOTUFile* read;
 	vector<Calculator*> sumCalculators;	
@@ -37,11 +42,12 @@ private:
 	bool abort, allLines, mult, all;
 	set<string> labels; //holds labels to be used
 	string label, calc, groups;
-	vector<string>  Estimators, Groups;
+	vector<string>  Estimators, Groups, outputNames;
 	vector<SharedRAbundVector*> lookup;
-	string outputFileName, format, outAllFileName;
-	ofstream outputFileHandle, outAll;
-	void process(vector<SharedRAbundVector*>);
+	string format, outputDir;
+	int numGroups, processors;
+	int process(vector<SharedRAbundVector*>, string, string);
+	int driver(vector<SharedRAbundVector*>, int, int, string, string);
 
 };