X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=summarysharedcommand.h;h=99ed5d039c9e95e6404731d092b81c2f824a0309;hb=e0ce7cbc93d7d2fbb753ca694182db092a0ea0e7;hp=fbfea7bd98fac33bb8570934b6bcd9e9d99ceaba;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index fbfea7b..99ed5d0 100644
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -84,15 +84,16 @@ private:
 	vector<Calculator*> sumCalculators;	
 	InputData* input;
 	
-	bool abort, allLines, mult, all, createPhylip;
+	bool abort, allLines, mult, all, createPhylip, subsample;
 	set<string> labels; //holds labels to be used
-	string label, calc, groups, sharedfile;
+	string label, calc, groups, sharedfile, output;
 	vector<string>  Estimators, Groups, outputNames;
 	vector<SharedRAbundVector*> lookup;
 	string format, outputDir;
-	int numGroups, processors;
+	int numGroups, processors, subsampleSize, iters;
 	int process(vector<SharedRAbundVector*>, string, string);
 	int driver(vector<SharedRAbundVector*>, int, int, string, string, vector< vector<seqDist> >&);
+    int printSims(ostream&, vector< vector<double> >&);
 
 };