X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=summarysharedcommand.cpp;h=6a09ada5d3e8e4141c56a0c0ef4943beae6ef815;hb=4f4070ac3fbb5da75f834b48062e9123364b006e;hp=0a742ea562852e8097485bea5a67200f6d8524c8;hpb=f230fb6e52e16dace3680d5a7ebe1dae59033ec6;p=mothur.git

diff --git a/summarysharedcommand.cpp b/summarysharedcommand.cpp
index 0a742ea..6a09ada 100644
--- a/summarysharedcommand.cpp
+++ b/summarysharedcommand.cpp
@@ -164,6 +164,11 @@ int SummarySharedCommand::execute(){
 			outputFileHandle.close();  remove(outputFileName.c_str());
 			if (mult == true) {  outAll.close();  remove(outAllFileName.c_str());  }
 			return 0;
+		//if you only have 2 groups you don't need a .sharedmultiple file
+		}else if ((lookup.size() == 2) && (mult == true)) { 
+			mult = false;
+			outAll.close();  
+			remove(outAllFileName.c_str());
 		}
 					
 		//if the users enters label "0.06" and there is no "0.06" in their file use the next lowest label.