X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=summarysharedcommand.cpp;h=2c9399bda1dd363d04c1fed89ff9b12ea8c3aace;hb=37b23ba7d98eca13d02cde8d3b1ad08ac92fefb9;hp=d93fb6e775392b5436b6dadbb99c88761e862de8;hpb=70491a12902e89b85cfa6b44a7b7fbe066ee2ac1;p=mothur.git

diff --git a/summarysharedcommand.cpp b/summarysharedcommand.cpp
index d93fb6e..2c9399b 100644
--- a/summarysharedcommand.cpp
+++ b/summarysharedcommand.cpp
@@ -184,9 +184,6 @@ SummarySharedCommand::SummarySharedCommand(string option)  {
 			string temp = validParameter.validFile(parameters, "all", false);				if (temp == "not found") { temp = "false"; }
 			all = m->isTrue(temp);
 			
-			temp = validParameter.validFile(parameters, "distance", false);					if (temp == "not found") { temp = "false"; }
-			createPhylip = m->isTrue(temp);
-			
             temp = validParameter.validFile(parameters, "iters", false);			if (temp == "not found") { temp = "1000"; }
 			m->mothurConvert(temp, iters); 
             
@@ -204,6 +201,10 @@ SummarySharedCommand::SummarySharedCommand(string option)  {
             
             if (subsample == false) { iters = 0; }
             
+            temp = validParameter.validFile(parameters, "distance", false);					if (temp == "not found") { temp = "false"; }
+			createPhylip = m->isTrue(temp);
+            if (subsample) { createPhylip = true; }
+            
 			temp = validParameter.validFile(parameters, "processors", false);	if (temp == "not found"){	temp = m->getProcessors();	}
 			m->setProcessors(temp);
 			m->mothurConvert(temp, processors);