X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=summaryqualcommand.cpp;h=3dc6582f93f6654c41b14c0da5739348d023b11b;hb=60928795782d8f8648ec373d6a96b53032a77429;hp=0f6f719ef568446af70438eb08579a81c7c6f3f6;hpb=14cddf859d97118481161bf3e85a647976020758;p=mothur.git

diff --git a/summaryqualcommand.cpp b/summaryqualcommand.cpp
index 0f6f719..3dc6582 100644
--- a/summaryqualcommand.cpp
+++ b/summaryqualcommand.cpp
@@ -196,7 +196,7 @@ int SummaryQualCommand::execute(){
 		if (namefile != "") { nameMap = m->readNames(namefile); }
 		else if (countfile != "") {
             CountTable ct;
-            ct.readTable(countfile);
+            ct.readTable(countfile, false, false);
             nameMap = ct.getNameMap();
         }
         
@@ -347,7 +347,7 @@ int SummaryQualCommand::createProcessesCreateSummary(vector<int>& position, vect
 				
 				//pass numSeqs to parent
 				ofstream out;
-				string tempFile = qualfile + toString(getpid()) + ".num.temp";
+				string tempFile = qualfile + m->mothurGetpid(process) + ".num.temp";
 				m->openOutputFile(tempFile, out);
 				
 				out << numSeqs << endl;