X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=suffixtree.hpp;h=d2b69e42325777d508a23000b0bc0924e0cc34f9;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=b85cee90f93cd59cc34a604840de9d8d6c613a61;hpb=02909d6cae9963ba00dc746969a370fa8ca934fc;p=mothur.git

diff --git a/suffixtree.hpp b/suffixtree.hpp
index b85cee9..d2b69e4 100644
--- a/suffixtree.hpp
+++ b/suffixtree.hpp
@@ -36,12 +36,12 @@ class SuffixTree {
 public:
 	SuffixTree();
 	~SuffixTree();
-//	SuffixTree(string, string);
 
 	void loadSequence(Sequence);
 	string getSeqName();
 	void print();	
 	int countSuffixes(string, int&);
+	int countSuffixes(string);	
 
 private:	
 	void addPrefix(int);
@@ -59,6 +59,7 @@ private:
 	int nodeCounter;
 	string seqName;
 	string sequence;
+	MothurOut* m;
 	
 };