X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=suffixdb.hpp;h=ca1ff42a11c6bcbd689e0e49e2cdfb36604e0807;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=1baa99e8d09fbcaa3a52abefb03811d6c3a3ed5f;hpb=63e089e0b3aad1741bab60119ed7ccc784dce347;p=mothur.git

diff --git a/suffixdb.hpp b/suffixdb.hpp
index 1baa99e..ca1ff42 100644
--- a/suffixdb.hpp
+++ b/suffixdb.hpp
@@ -20,13 +20,20 @@
 
 #include "mothur.h"
 #include "database.hpp"
-
-class SuffixTree;
+#include "suffixtree.hpp"
+//class SuffixTree;
 
 class SuffixDB : public Database {
 	
 public:
 	SuffixDB(int);
+	SuffixDB();
+	SuffixDB(const SuffixDB& sdb) : count(sdb.count), Database(sdb) {
+		for (int i = 0; i < sdb.suffixForest.size(); i++) {
+			SuffixTree temp(sdb.suffixForest[i]);
+			suffixForest.push_back(temp);
+		}
+	}
 	~SuffixDB();
 	
 	void generateDB() {}; //adding sequences generates the db