X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=suffixdb.hpp;h=393b4a52f3fde135a1dd80009b6dc44dc5340737;hb=fc1ed1ae1b022719176910ab71993bd6535810ad;hp=f211aa7ba7f612613419c54e551cb0755d2dffc7;hpb=02909d6cae9963ba00dc746969a370fa8ca934fc;p=mothur.git

diff --git a/suffixdb.hpp b/suffixdb.hpp
index f211aa7..393b4a5 100644
--- a/suffixdb.hpp
+++ b/suffixdb.hpp
@@ -26,12 +26,17 @@ class SuffixTree;
 class SuffixDB : public Database {
 	
 public:
-	SuffixDB(string);
+	SuffixDB(int);
+	SuffixDB();
 	~SuffixDB();
-	Sequence findClosestSequence(Sequence*);
+	
+	void generateDB() {}; //adding sequences generates the db
+	void addSequence(Sequence);
+	vector<int> findClosestSequences(Sequence*, int);
 
 private:
 	vector<SuffixTree> suffixForest;
+	int count;
 };
 
 #endif