X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=suffixdb.cpp;fp=suffixdb.cpp;h=5bcd8e96c0be725ee978ba74a4d32bb36b3aa4e0;hb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2;hp=5e6fd10455ce5557033234a470d7bd68fed37c41;hpb=37e0d78135e32b5aa58ca163f4d416716c78b67f;p=mothur.git

diff --git a/suffixdb.cpp b/suffixdb.cpp
index 5e6fd10..5bcd8e9 100644
--- a/suffixdb.cpp
+++ b/suffixdb.cpp
@@ -25,11 +25,11 @@
 SuffixDB::SuffixDB(string fastaFileName) : Database(fastaFileName) {
 
 	suffixForest.resize(numSeqs);
-	cout << "Generating the suffix tree database...\t";	cout.flush();
+	mothurOut("Generating the suffix tree database...\t");	cout.flush();
 	for(int i=0;i<numSeqs;i++){								//	The parent class' constructor generates the vector of
 		suffixForest[i].loadSequence(templateSequences[i]);	//	template Sequence objects.  Here each of these objects
 	}														//	is used to generate a suffix tree, aka the suffix forest
-	cout << "DONE." << endl << endl;	cout.flush();
+	mothurOut("DONE."); mothurOutEndLine();	mothurOutEndLine(); cout.flush();
 
 }