X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=subsamplecommand.h;h=b70050653fd5ded5a9b25b555efea08ae79b9565;hb=3a13eff5c26d6fc156a299c9fa7f5497bded94a0;hp=f068ac32eb975f6fa246fe654d84f56db0e33c3a;hpb=89f19f9c6ab89c2f6c7c6921a328ae87bce6f8e3;p=mothur.git

diff --git a/subsamplecommand.h b/subsamplecommand.h
index f068ac3..b700506 100644
--- a/subsamplecommand.h
+++ b/subsamplecommand.h
@@ -41,10 +41,21 @@ private:
 	vector<string> Groups, outputNames;
 	map<string, vector<string> > outputTypes;
 	int size;
+	vector<string> names;
+	map<string, vector<string> > nameMap;
 	
 	int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
 	int getSubSampleShared();
+	int getSubSampleList();
+	int getSubSampleRabund();
+	int getSubSampleSabund();
+	int getSubSampleFasta();
 	int processShared(vector<SharedRAbundVector*>&, ofstream&);
+	int processRabund(RAbundVector*&, ofstream&);
+	int processSabund(SAbundVector*&, ofstream&);
+	int processList(ListVector*&, ofstream&, set<string>&);
+	int getNames();
+	int readNames();
 	
 };