X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=subsamplecommand.cpp;h=8c5761d7209df23b3a8127475772e3d80b89967e;hb=dc383fb61b6d165a8d36e6108df8bc7129243ae6;hp=35441013919fbfe55452532e735b5bd1d7673f2f;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/subsamplecommand.cpp b/subsamplecommand.cpp
index 3544101..8c5761d 100644
--- a/subsamplecommand.cpp
+++ b/subsamplecommand.cpp
@@ -569,8 +569,8 @@ int SubSampleCommand::getSubSampleFasta() {
 			delete uniqueCommand;
 			m->mothurCalling = false;
             
-            m->renameFile(filenames["name"][0], outputNameFileName);
-            m->renameFile(filenames["fasta"][0], outputFileName);
+            m->renameFile(filenames["name"][0], outputNameFileName); 
+            m->renameFile(filenames["fasta"][0], outputFileName);  
             
 			outputTypes["name"].push_back(outputNameFileName);  outputNames.push_back(outputNameFileName);
 
@@ -808,7 +808,7 @@ int SubSampleCommand::processShared(vector<SharedRAbundVector*>& thislookup) {
 		
 		string thisOutputDir = outputDir;
 		if (outputDir == "") {  thisOutputDir += m->hasPath(sharedfile);  }
-		string outputFileName = thisOutputDir + m->getRootName(m->getSimpleName(sharedfile)) + thislookup[0]->getLabel() + getOutputFileNameTag("shared", sharedfile);        
+		string outputFileName = thisOutputDir + m->getRootName(m->getSimpleName(sharedfile)) + thislookup[0]->getLabel() + "." +getOutputFileNameTag("shared", sharedfile);        
         SubSample sample;
         vector<string> subsampledLabels = sample.getSample(thislookup, size);