X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=structchord.cpp;fp=structchord.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=e85846f9d657466a2609837f5db4fe897f9dc472;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/structchord.cpp b/structchord.cpp
deleted file mode 100644
index e85846f..0000000
--- a/structchord.cpp
+++ /dev/null
@@ -1,55 +0,0 @@
-/*
- *  structchord.cpp
- *  Mothur
- *
- *  Created by westcott on 12/15/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "structchord.h"
-
-/***********************************************************************/
-EstOutput StructChord::getValues(vector<SharedRAbundVector*> shared) {
-	try {
-		data.resize(1,0);
-		
-		double sumAj2 = 0.0;
-		double sumBj2 = 0.0;
-		
-		//calc the 2 denominators
-		for (int i = 0; i < shared[0]->getNumBins(); i++) { 
-			
-			int Aij = shared[0]->getAbundance(i);
-			int Bij = shared[1]->getAbundance(i);
-			
-			//(Aij) ^ 2
-			sumAj2 += (Aij * Aij);
-			sumBj2 += (Bij * Bij);
-		}
-		
-		sumAj2 = sqrt(sumAj2);
-		sumBj2 = sqrt(sumBj2);
-		
-		//calc sum
-		double sum = 0.0;
-		for (int i = 0; i < shared[0]->getNumBins(); i++) { 
-			
-			int Aij = shared[0]->getAbundance(i);
-			int Bij = shared[1]->getAbundance(i);
-			
-			sum += (((Aij / sumAj2) - (Bij / sumBj2)) * ((Aij / sumAj2) - (Bij / sumBj2)));
-		}
-		
-		data[0] = sqrt(sum);
-		
-		if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-		
-		return data;
-	}
-	catch(exception& e) {
-		m->errorOut(e, "StructChord", "getValues");
-		exit(1);
-	}
-}
-/***********************************************************************/