X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2Fapi%2Finternal%2FBgzfStream_p.h;h=88d7472eeebfa81bed6cd2021841a2534877b7ac;hb=9f1ce8c47aeadb6dc1320b52ee671c3341b97935;hp=07aae52a195751281884e3b8c164663bcd2702bf;hpb=8a90b7aefffaf186053ef4da96c8663bf528274a;p=bamtools.git

diff --git a/src/api/internal/BgzfStream_p.h b/src/api/internal/BgzfStream_p.h
index 07aae52..88d7472 100644
--- a/src/api/internal/BgzfStream_p.h
+++ b/src/api/internal/BgzfStream_p.h
@@ -2,7 +2,7 @@
 // BgzfStream_p.h (c) 2011 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 7 October 2011(DB)
+// Last modified: 10 October 2011(DB)
 // ---------------------------------------------------------------------------
 // Based on BGZF routines developed at the Broad Institute.
 // Provides the basic functionality for reading & writing BGZF files
@@ -22,12 +22,8 @@
 //
 // We mean it.
 
-#include <api/BamAux.h>
-#include <api/BamConstants.h>
-#include <api/IBamIODevice.h>
-#include "zlib.h"
-#include <cstdio>
-#include <memory>
+#include "api/api_global.h"
+#include "api/IBamIODevice.h"
 #include <string>
 
 namespace BamTools {
@@ -46,8 +42,7 @@ class BgzfStream {
         void Close(void);
         // returns true if BgzfStream open for IO
         bool IsOpen(void) const;
-        // opens the BGZF file (mode is either "rb" for reading, or "wb" for writing)
-        void Open(const std::string& filename, const char* mode);
+        // opens the BGZF file
         void Open(const std::string& filename, const IBamIODevice::OpenMode mode);
         // reads BGZF data into a byte buffer
         size_t Read(char* data, const size_t dataLength);
@@ -84,10 +79,7 @@ class BgzfStream {
         unsigned int m_blockOffset;
         uint64_t     m_blockAddress;
 
-        bool m_isOpen;
-        bool m_isWriteOnly;
         bool m_isWriteCompressed;
-
         IBamIODevice* m_device;
 
         struct RaiiWrapper {
@@ -95,7 +87,6 @@ class BgzfStream {
             ~RaiiWrapper(void);
             char* UncompressedBlock;
             char* CompressedBlock;
-            FILE* Stream;
         };
         RaiiWrapper Resources;
 };