X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2Fapi%2FCMakeLists.txt;h=5b66ec024b072c50cd2941ca241e2df23f27aa4d;hb=bafc03f4ed7ed9ff1b3fb24874dc8a4a6d58e605;hp=3e2ddd5b022ac309a3f5e0dce80f8d36754485be;hpb=af6a3d8491e485969d2df306e41cb9439dec4039;p=bamtools.git

diff --git a/src/api/CMakeLists.txt b/src/api/CMakeLists.txt
index 3e2ddd5..5b66ec0 100644
--- a/src/api/CMakeLists.txt
+++ b/src/api/CMakeLists.txt
@@ -12,7 +12,10 @@ include_directories( ${BamTools_SOURCE_DIR}/src )
 add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
 add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
 
-# list of all BamTools API source (.cpp) files
+# fetch all internal source files
+add_subdirectory ( internal )
+
+# make list of all API source files
 set( BamToolsAPISources
         BamAlignment.cpp
         BamMultiReader.cpp
@@ -25,41 +28,30 @@ set( BamToolsAPISources
         SamReadGroupDictionary.cpp
         SamSequence.cpp
         SamSequenceDictionary.cpp
-        internal/BamDeviceFactory_p.cpp
-        internal/BamException_p.cpp
-        internal/BamFile_p.cpp
-        internal/BamFtp_p.cpp
-        internal/BamHeader_p.cpp
-        internal/BamHttp_p.cpp
-        internal/BamIndexFactory_p.cpp
-        internal/BamMultiReader_p.cpp
-        internal/BamPipe_p.cpp
-        internal/BamRandomAccessController_p.cpp
-        internal/BamReader_p.cpp
-        internal/BamStandardIndex_p.cpp
-        internal/BamToolsIndex_p.cpp
-        internal/BamWriter_p.cpp
-        internal/BgzfStream_p.cpp
-        internal/ILocalIODevice_p.cpp
-        internal/IRemoteIODevice_p.cpp
-        internal/SamFormatParser_p.cpp
-        internal/SamFormatPrinter_p.cpp
-        internal/SamHeaderValidator_p.cpp
+        ${InternalSources}
 )
 
 # create main BamTools API shared library
 add_library( BamTools SHARED ${BamToolsAPISources} )
-set_target_properties( BamTools PROPERTIES SOVERSION "2.0.3" )
-set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
+set_target_properties( BamTools PROPERTIES
+                       SOVERSION "2.2.0"
+                       OUTPUT_NAME "bamtools" )
 
 # create main BamTools API static library
 add_library( BamTools-static STATIC ${BamToolsAPISources} )
-set_target_properties( BamTools-static PROPERTIES OUTPUT_NAME "bamtools" )
-set_target_properties( BamTools-static PROPERTIES PREFIX "lib" )
+set_target_properties( BamTools-static PROPERTIES 
+                       OUTPUT_NAME "bamtools" 
+                       PREFIX "lib" )
+
+# link libraries automatically with zlib (and Winsock2, if applicable)
+if( _WIN32 )
+    set( APILibs z ws2_32 )
+else( _WIN32 )
+    set( APILibs z )
+endif( _WIN32 )
 
-# link libraries with zlib automatically
-target_link_libraries( BamTools z )
-target_link_libraries( BamTools-static z )
+target_link_libraries( BamTools ${APILibs} )
+target_link_libraries( BamTools-static ${APILibs} )
 
 # set library install destinations
 install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
@@ -69,7 +61,7 @@ install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
 include(../ExportHeader.cmake)
 set(ApiIncludeDir "api")
 ExportHeader(APIHeaders api_global.h             ${ApiIncludeDir})
-ExportHeader(APIHeaders BamAlgorithms.h           ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlgorithms.h          ${ApiIncludeDir})
 ExportHeader(APIHeaders BamAlignment.h           ${ApiIncludeDir})
 ExportHeader(APIHeaders BamAux.h                 ${ApiIncludeDir})
 ExportHeader(APIHeaders BamConstants.h           ${ApiIncludeDir})
@@ -87,5 +79,5 @@ ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
 ExportHeader(APIHeaders SamSequence.h            ${ApiIncludeDir})
 ExportHeader(APIHeaders SamSequenceDictionary.h  ${ApiIncludeDir})
 
-set(AlgorithmsIncludeDir "api/algorithms")
-ExportHeader(AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir})
+set( AlgorithmsIncludeDir "api/algorithms" )
+ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )