X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2Fapi%2FBamReader.h;h=30c4d5f4de1fa1c415738c54f914f9b7f5dd2314;hb=9f1ce8c47aeadb6dc1320b52ee671c3341b97935;hp=ce04af65a9edbd364c323dba22acde565dd3ea0c;hpb=2e049ed7f28881bce09653e60f5aea54bfd7afbf;p=bamtools.git diff --git a/src/api/BamReader.h b/src/api/BamReader.h index ce04af6..30c4d5f 100644 --- a/src/api/BamReader.h +++ b/src/api/BamReader.h @@ -2,7 +2,7 @@ // BamReader.h (c) 2009 Derek Barnett, Michael Str�mberg // Marth Lab, Department of Biology, Boston College // --------------------------------------------------------------------------- -// Last modified: 7 October 2011 (DB) +// Last modified: 10 October 2011 (DB) // --------------------------------------------------------------------------- // Provides read access to BAM files. // *************************************************************************** @@ -10,10 +10,10 @@ #ifndef BAMREADER_H #define BAMREADER_H -#include -#include -#include -#include +#include "api/api_global.h" +#include "api/BamAlignment.h" +#include "api/BamIndex.h" +#include "api/SamHeader.h" #include namespace BamTools { @@ -108,11 +108,6 @@ class API_EXPORT BamReader { // returns a human-readable description of the last error that occurred std::string GetErrorString(void) const; - - // deprecated methods - public: - // returns true if index data is available - bool IsIndexLoaded(void) const; // private implementation private: