X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2Fapi%2FBamReader.h;h=30c4d5f4de1fa1c415738c54f914f9b7f5dd2314;hb=9f1ce8c47aeadb6dc1320b52ee671c3341b97935;hp=85b0c0d5713ed15f4a616ec4a6f7e1c2ab9d3c1b;hpb=8c80d760637f8df39262683cd2570f0589423d36;p=bamtools.git

diff --git a/src/api/BamReader.h b/src/api/BamReader.h
index 85b0c0d..30c4d5f 100644
--- a/src/api/BamReader.h
+++ b/src/api/BamReader.h
@@ -1,9 +1,8 @@
 // ***************************************************************************
 // BamReader.h (c) 2009 Derek Barnett, Michael Str�mberg
 // Marth Lab, Department of Biology, Boston College
-// All rights reserved.
 // ---------------------------------------------------------------------------
-// Last modified: 4 March 2011 (DB)
+// Last modified: 10 October 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides read access to BAM files.
 // ***************************************************************************
@@ -11,10 +10,10 @@
 #ifndef BAMREADER_H
 #define BAMREADER_H
 
-#include <api/api_global.h>
-#include <api/BamAlignment.h>
-#include <api/BamIndex.h>
-#include <api/SamHeader.h>
+#include "api/api_global.h"
+#include "api/BamAlignment.h"
+#include "api/BamIndex.h"
+#include "api/SamHeader.h"
 #include <string>
 
 namespace BamTools {
@@ -38,7 +37,7 @@ class API_EXPORT BamReader {
         // ----------------------
 
         // closes the current BAM file
-        void Close(void);
+        bool Close(void);
         // returns filename of current BAM file
         const std::string GetFilename(void) const;
         // returns true if a BAM file is open for reading
@@ -103,10 +102,12 @@ class API_EXPORT BamReader {
         // changes the caching behavior of the index data
         void SetIndexCacheMode(const BamIndex::IndexCacheMode& mode);
 
-    // deprecated methods
-    public:
-        // returns true if index data is available
-        bool IsIndexLoaded(void) const;
+        // ----------------------
+        // error handling
+        // ----------------------
+
+        // returns a human-readable description of the last error that occurred
+        std::string GetErrorString(void) const;
         
     // private implementation
     private: