X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2Fapi%2FBamMultiReader.h;h=43ef56a86c6d0a8cfead8ba12155443ab1e7ee76;hb=daf64972794dbbdae4bea6a0495578708c86363b;hp=cc49ec8eb2076469be2585bdf978bd603acec8a3;hpb=038f0e1dda24b2d6765cc8c878b7dbdc5f922ed6;p=bamtools.git

diff --git a/src/api/BamMultiReader.h b/src/api/BamMultiReader.h
index cc49ec8..43ef56a 100644
--- a/src/api/BamMultiReader.h
+++ b/src/api/BamMultiReader.h
@@ -3,7 +3,7 @@
 // Marth Lab, Department of Biology, Boston College
 // All rights reserved.
 // ---------------------------------------------------------------------------
-// Last modified: 15 March 2011 (DB)
+// Last modified: 1 October 2011 (DB)
 // ---------------------------------------------------------------------------
 // Convenience class for reading multiple BAM files.
 // ***************************************************************************
@@ -26,12 +26,6 @@ namespace Internal {
 
 class API_EXPORT BamMultiReader {
 
-    public:
-        enum SortOrder { SortedByPosition = 0
-                       , SortedByReadName
-                       , Unsorted
-                       };
-
     // constructor / destructor
     public:
         BamMultiReader(void);
@@ -74,12 +68,9 @@ class API_EXPORT BamMultiReader {
 
         // retrieves next available alignment
         bool GetNextAlignment(BamAlignment& alignment);
-        // retrieves next available alignmnet (without populating the alignment's string data fields)
+        // retrieves next available alignment (without populating the alignment's string data fields)
         bool GetNextAlignmentCore(BamAlignment& alignment);
 
-        // sets the expected sorting order for reading across multiple BAM files
-        void SetSortOrder(const SortOrder& order);
-
         // ----------------------
         // access auxiliary data
         // ----------------------
@@ -110,13 +101,6 @@ class API_EXPORT BamMultiReader {
         // changes the caching behavior of the index data
         void SetIndexCacheMode(const BamIndex::IndexCacheMode& mode);
 
-    // deprecated methods
-    public:
-        // returns \c true if all BAM files have index data available.
-        bool IsIndexLoaded(void) const;
-        // convenience method for printing filenames to stdout
-        void PrintFilenames(void) const;
-
     // private implementation
     private:
         Internal::BamMultiReaderPrivate* d;