X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2FMakefile.am;h=aeb9c85f6a2df5288462021a6613c246b65b6f0d;hb=a7a328a691ab370ed7fd61c9c04af9def02395d5;hp=4d47d16df5cfb8e33677f93be09437d895eda756;hpb=54e8755d8c3bf9df0e27aae9ac6ee8976d5943c4;p=fastq-tools.git

diff --git a/src/Makefile.am b/src/Makefile.am
index 4d47d16..aeb9c85 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,15 +1,23 @@
 
-SUBDIRS = swsse2
+bin_PROGRAMS = fastq-grep fastq-kmers fastq-match fastq-uniq fastq-qual fastq-sample fastq-qualadj
 
-bin_PROGRAMS = fastq-grep fastq-kmers fastq-match
+fastq_common_src=common.h common.c
+fastq_parse_src=parse.h parse.c
+fastq_sw_src=sw.h sw.c
+fastq_hash_src=hash.h hash.c
+fastq_rng_src=rng.h rng.c
 
-fastq_grep_SOURCES = kseq.h fastq-grep.c
-fastq_grep_LDADD = $(PCRE_LIBS) -lz
+fastq_grep_SOURCES = fastq-grep.c $(fastq_common_src) $(fastq_parse_src)
+fastq_grep_LDADD = $(PCRE_LIBS)
 
-fastq_kmers_SOURCES = kseq.h fastq-kmers.c
-fastq_kmers_LDADD = -lz
+fastq_kmers_SOURCES = fastq-kmers.c $(fastq_common_src) $(fastq_parse_src)
 
-fastq_match_SOURCES = kseq.h fastq-match.c
-fastq_match_LDADD   = swsse2/libswsse2.la -lz
-fastq_match_CFLAGS  = -msse2
+fastq_match_SOURCES = fastq-match.c $(fastq_common_src) $(fastq_parse_src) $(fastq_sw_src)
 
+fastq_uniq_SOURCES = fastq-uniq.c $(fastq_common_src) $(fastq_parse_src) $(fastq_hash_src)
+
+fastq_qual_SOURCES = fastq-qual.c $(fastq_common_src) $(fastq_parse_src)
+
+fastq_sample_SOURCES = fastq-sample.c $(fastq_common_src) $(fastq_parse_src) $(fastq_rng_src)
+
+fastq_qualadj_SOURCES = fastq-qualadj.c $(fastq_common_src) $(fastq_parse_src)