X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2FMakefile.am;h=989ae69c771ee501f1a2f040ae6c0190efb49b74;hb=40ab4c0cde1bfee1616777995998b0cbc5ffc741;hp=c50f420bcd01e4396244e757fb4beec46d82b109;hpb=48a5939e574874106f1450fd278f602b731d2a83;p=fastq-tools.git diff --git a/src/Makefile.am b/src/Makefile.am index c50f420..989ae69 100644 --- a/src/Makefile.am +++ b/src/Makefile.am @@ -1,15 +1,21 @@ -SUBDIRS = swsse2 +bin_PROGRAMS = fastq-grep fastq-kmers fastq-match fastq-uniq -bin_PROGRAMS = fastq-grep fastq-kmers fastq-match +fastq_common_src=common.h common.c +fastq_parse_src=parse.h parse.c +fastq_sw_src=sw.h sw.c +fastq_hash_src=hash.h hash.c -fastq_grep_SOURCES = kseq.h fastq-grep.c fastq-parse.c fastq-common.c +fastq_grep_SOURCES = fastq-grep.c $(fastq_common_src) $(fastq_parse_src) fastq_grep_LDADD = $(PCRE_LIBS) -lz -fastq_kmers_SOURCES = kseq.h fastq-kmers.c fastq-parse.c fastq-common.c +fastq_kmers_SOURCES = fastq-kmers.c $(fastq_common_src) $(fastq_parse_src) fastq_kmers_LDADD = -lz -fastq_match_SOURCES = kseq.h fastq-match.c fastq-parse.c fastq-common.c -fastq_match_LDADD = swsse2/libswsse2.la -lz -fastq_match_CFLAGS = -msse2 +fastq_match_SOURCES = fastq-match.c $(fastq_common_src) $(fastq_parse_src) $(fastq_sw_src) +fastq_match_LDADD = -lz + +fastq_uniq_SOURCES = fastq-uniq.c $(fastq_common_src) $(fastq_parse_src) $(fastq_hash_src) +fastq_uniq_LDADD = -lz +