X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2FMakefile.am;h=989ae69c771ee501f1a2f040ae6c0190efb49b74;hb=40ab4c0cde1bfee1616777995998b0cbc5ffc741;hp=4d47d16df5cfb8e33677f93be09437d895eda756;hpb=54e8755d8c3bf9df0e27aae9ac6ee8976d5943c4;p=fastq-tools.git

diff --git a/src/Makefile.am b/src/Makefile.am
index 4d47d16..989ae69 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,15 +1,21 @@
 
-SUBDIRS = swsse2
+bin_PROGRAMS = fastq-grep fastq-kmers fastq-match fastq-uniq
 
-bin_PROGRAMS = fastq-grep fastq-kmers fastq-match
+fastq_common_src=common.h common.c
+fastq_parse_src=parse.h parse.c
+fastq_sw_src=sw.h sw.c
+fastq_hash_src=hash.h hash.c
 
-fastq_grep_SOURCES = kseq.h fastq-grep.c
+fastq_grep_SOURCES = fastq-grep.c $(fastq_common_src) $(fastq_parse_src)
 fastq_grep_LDADD = $(PCRE_LIBS) -lz
 
-fastq_kmers_SOURCES = kseq.h fastq-kmers.c
+fastq_kmers_SOURCES = fastq-kmers.c $(fastq_common_src) $(fastq_parse_src)
 fastq_kmers_LDADD = -lz
 
-fastq_match_SOURCES = kseq.h fastq-match.c
-fastq_match_LDADD   = swsse2/libswsse2.la -lz
-fastq_match_CFLAGS  = -msse2
+fastq_match_SOURCES = fastq-match.c $(fastq_common_src) $(fastq_parse_src) $(fastq_sw_src)
+fastq_match_LDADD   = -lz
+
+fastq_uniq_SOURCES = fastq-uniq.c $(fastq_common_src) $(fastq_parse_src) $(fastq_hash_src)
+fastq_uniq_LDADD   = -lz
+