X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=src%2FMakefile.am;h=1fc7d3a6572e342aa5a3bb5d2b47c161125b96a1;hb=229848ff462383b1fba2a073e5f7139856d2873d;hp=202e6c2adf1375cbb2dd08b699d0ff970d446edc;hpb=1a97afb4a336f49f700eae050908c3e68f415ee6;p=fastq-tools.git

diff --git a/src/Makefile.am b/src/Makefile.am
index 202e6c2..1fc7d3a 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,10 +1,26 @@
 
-bin_PROGRAMS = fastq-grep fastq-kmers
+bin_PROGRAMS = fastq-grep fastq-kmers fastq-match fastq-uniq fastq-qual fastq-sample fastq-qualadj fastq-sort
 
-fastq_grep_SOURCES = kseq.h fastq-grep.c
-fastq_grep_LDADD = $(PCRE_LIBS) -lz
+fastq_common_src=common.h common.c
+fastq_parse_src=parse.h parse.c
+fastq_sw_src=sw.h sw.c
+fastq_hash_src=hash.h hash.c
+fastq_rng_src=rng.h rng.c
 
-fastq_kmers_SOURCES = kseq.h fastq-kmers.c
-fastq_kmers_LDADD = -lz
+fastq_grep_SOURCES = fastq-grep.c $(fastq_common_src) $(fastq_parse_src)
+fastq_grep_LDADD = $(PCRE_LIBS)
 
+fastq_kmers_SOURCES = fastq-kmers.c $(fastq_common_src) $(fastq_parse_src)
+
+fastq_match_SOURCES = fastq-match.c $(fastq_common_src) $(fastq_parse_src) $(fastq_sw_src)
+
+fastq_uniq_SOURCES = fastq-uniq.c $(fastq_common_src) $(fastq_parse_src) $(fastq_hash_src)
+
+fastq_qual_SOURCES = fastq-qual.c $(fastq_common_src) $(fastq_parse_src)
+
+fastq_sample_SOURCES = fastq-sample.c $(fastq_common_src) $(fastq_parse_src) $(fastq_rng_src)
+
+fastq_qualadj_SOURCES = fastq-qualadj.c $(fastq_common_src) $(fastq_parse_src)
+
+fastq_sort_SOURCES = fastq-sort.c $(fastq_common_src) $(fastq_parse_src)