X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitmatrix.h;h=b8aa55119c810871988e76ca156b1746bd4eeb4a;hb=0cefb55a2616975bd4a144fc345693695ffc9bb6;hp=b98bdfb4b56b952d9ca0a2c7a784c22f02671e94;hpb=a0f87c2ae6414af28d4e70b1e6830401eac21bef;p=mothur.git

diff --git a/splitmatrix.h b/splitmatrix.h
index b98bdfb..b8aa551 100644
--- a/splitmatrix.h
+++ b/splitmatrix.h
@@ -20,7 +20,7 @@ class SplitMatrix  {
 	public:
 
 		SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method, large
-		SplitMatrix(string, string, string, float, string, int); //fastafile, namefile, taxFile, cutoff, method, processors
+		SplitMatrix(string, string, string, float, float, string, int, bool, string); //fastafile, namefile, taxFile, taxcutoff, cutoff, method, processors, classic, outputDir
 		
 		~SplitMatrix();
 		int split();
@@ -30,10 +30,10 @@ class SplitMatrix  {
 	private:
 		MothurOut* m;
 
-		string distFile, namefile, singleton, method, taxFile, fastafile;
+		string distFile, namefile, singleton, method, taxFile, fastafile, outputDir;
 		vector< map< string, string> > dists;
-		float cutoff;
-		bool large;
+		float cutoff, distCutoff;
+		bool large, classic;
 		int processors;
 				
 		int splitDistance();