X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitmatrix.h;h=4ff316073789b694916a75fae5d2081a813d96c7;hb=c651c46022761aef61644f78462365d8f767ff0b;hp=b98bdfb4b56b952d9ca0a2c7a784c22f02671e94;hpb=a0f87c2ae6414af28d4e70b1e6830401eac21bef;p=mothur.git

diff --git a/splitmatrix.h b/splitmatrix.h
index b98bdfb..4ff3160 100644
--- a/splitmatrix.h
+++ b/splitmatrix.h
@@ -20,7 +20,7 @@ class SplitMatrix  {
 	public:
 
 		SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method, large
-		SplitMatrix(string, string, string, float, string, int); //fastafile, namefile, taxFile, cutoff, method, processors
+		SplitMatrix(string, string, string, float, float, string, int, string); //fastafile, namefile, taxFile, taxcutoff, cutoff, method, processors, outputDir
 		
 		~SplitMatrix();
 		int split();
@@ -30,9 +30,9 @@ class SplitMatrix  {
 	private:
 		MothurOut* m;
 
-		string distFile, namefile, singleton, method, taxFile, fastafile;
+		string distFile, namefile, singleton, method, taxFile, fastafile, outputDir;
 		vector< map< string, string> > dists;
-		float cutoff;
+		float cutoff, distCutoff;
 		bool large;
 		int processors;