X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitmatrix.h;fp=splitmatrix.h;h=95fe0dcb94939bb8968a0980a517368cb0ef8b2b;hb=2a7d1455e8cfe4f67a7173f3a7249762c5436217;hp=e38f8fc1ba7afd679a7cc308547e2e0f0c11a545;hpb=4d7ffb38e091e9e7425d94e112551a3f90cacb0f;p=mothur.git

diff --git a/splitmatrix.h b/splitmatrix.h
index e38f8fc..95fe0dc 100644
--- a/splitmatrix.h
+++ b/splitmatrix.h
@@ -19,7 +19,7 @@ class SplitMatrix  {
 	
 	public:
 
-		SplitMatrix(string, string, string, float, string); //column formatted distance file, namesfile, cutoff, method
+		SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method
 		~SplitMatrix();
 		int split();
 		vector< map<string, string> > getDistanceFiles();  //returns map of distance files -> namefile sorted by distance file size
@@ -31,9 +31,13 @@ class SplitMatrix  {
 		string distFile, namefile, singleton, method, taxFile;
 		vector< map< string, string> > dists;
 		float cutoff;
+		bool large;
 				
 		int splitDistance();
 		int splitClassify();
+		int splitDistanceLarge();
+		int splitDistanceRAM();
+		int splitNames(vector<set<string> >& groups);
 };
 
 /******************************************************/