X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitmatrix.h;fp=splitmatrix.h;h=5974ff1b967a5b3313bea6dcbcf967eb4b1c5023;hb=725a3d4ff2442c79bfde0a75ed3e0904edcf03b7;hp=0000000000000000000000000000000000000000;hpb=cfe70bbc94980a0177af465d3464db754673bd56;p=mothur.git

diff --git a/splitmatrix.h b/splitmatrix.h
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+#ifndef SPLITMATRIX_H
+#define SPLITMATRIX_H
+/*
+ *  splitmatrix.h
+ *  Mothur
+ *
+ *  Created by westcott on 5/19/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "mothur.h"
+#include "mothurout.h"
+
+/******************************************************/
+
+class SplitMatrix  {
+	
+	public:
+
+		SplitMatrix(string, string, float); //column formatted distance file, namesfile, cutoff
+		~SplitMatrix();
+		int split();
+		vector< map<string, string> > getDistanceFiles();  //returns map of distance files -> namefile sorted by distance file size
+		string getSingletonNames() { return singleton; } //returns namesfile containing singletons
+	
+	private:
+		string distFile, namefile, singleton;
+		vector< map< string, string> > dists;
+		float cutoff;
+		
+		MothurOut* m;
+};
+
+/******************************************************/
+
+#endif
+