X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitmatrix.h;fp=splitmatrix.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=4ff316073789b694916a75fae5d2081a813d96c7;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/splitmatrix.h b/splitmatrix.h
deleted file mode 100644
index 4ff3160..0000000
--- a/splitmatrix.h
+++ /dev/null
@@ -1,51 +0,0 @@
-#ifndef SPLITMATRIX_H
-#define SPLITMATRIX_H
-/*
- *  splitmatrix.h
- *  Mothur
- *
- *  Created by westcott on 5/19/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "mothur.h"
-#include "mothurout.h"
-
-/******************************************************/
-
-class SplitMatrix  {
-	
-	public:
-
-		SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method, large
-		SplitMatrix(string, string, string, float, float, string, int, string); //fastafile, namefile, taxFile, taxcutoff, cutoff, method, processors, outputDir
-		
-		~SplitMatrix();
-		int split();
-		vector< map<string, string> > getDistanceFiles();  //returns map of distance files -> namefile sorted by distance file size
-		string getSingletonNames() { return singleton; } //returns namesfile containing singletons
-	
-	private:
-		MothurOut* m;
-
-		string distFile, namefile, singleton, method, taxFile, fastafile, outputDir;
-		vector< map< string, string> > dists;
-		float cutoff, distCutoff;
-		bool large;
-		int processors;
-				
-		int splitDistance();
-		int splitClassify();
-		int splitDistanceLarge();
-		int splitDistanceRAM();
-		int splitNames(vector<set<string> >& groups);
-		int splitDistanceFileByTax(map<string, int>&, int);
-		int createDistanceFilesFromTax(map<string, int>&, int);
-};
-
-/******************************************************/
-
-#endif
-