X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitmatrix.cpp;h=b7a3b49362dbd7c67f54649ba1b846a5c7cf6c79;hb=6446d2e9713a95db5f772135b7aa3387f7ebf7bb;hp=a4e1f98581b9ce947dd53ad016dc347c71c99ffe;hpb=ca0785e447ca7aa7e2f0ab8bb1155db126b551ea;p=mothur.git

diff --git a/splitmatrix.cpp b/splitmatrix.cpp
index a4e1f98..b7a3b49 100644
--- a/splitmatrix.cpp
+++ b/splitmatrix.cpp
@@ -222,6 +222,7 @@ int SplitMatrix::createDistanceFilesFromTax(map<string, int>& seqGroup, int numG
 		
 		for(int i=0;i<numGroups;i++){
 			string tempNameFile = namefile + "." + toString(i) + ".temp";
+			if (outputDir == "") { outputDir = m->hasPath(fastafile); }
 			string tempDistFile = outputDir + m->getRootName(m->getSimpleName((fastafile + "." + toString(i) + ".temp"))) + "dist";
 
 			//if there are valid distances