X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitmatrix.cpp;h=a5ae3cbda79fd52a9358464eab1941c96a69bd63;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=28bc5d4cec4fc4ec409bca26359ed103951c8701;hpb=529ec122f7cac4af987e121d150b878d7c7a0d5d;p=mothur.git

diff --git a/splitmatrix.cpp b/splitmatrix.cpp
index 28bc5d4..a5ae3cb 100644
--- a/splitmatrix.cpp
+++ b/splitmatrix.cpp
@@ -191,8 +191,12 @@ int SplitMatrix::createDistanceFilesFromTax(map<string, int>& seqGroup, int numG
             else { options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", cutoff=" + toString(distCutoff); }
 			if (outputDir != "") { options += ", outputdir=" + outputDir; }
 			
+            m->mothurOut("/******************************************/"); m->mothurOutEndLine(); 
+            
 			Command* command = new DistanceCommand(options);
 			
+            m->mothurOut("/******************************************/"); m->mothurOutEndLine(); 
+            
 			command->execute();
 			delete command;
 			
@@ -637,7 +641,7 @@ int SplitMatrix::splitNames(map<string, int>& seqGroup, int numGroups, vector<st
                     ofstream out;
                     string newtempNameFile = tempNameFile + "2";
                     m->openOutputFile(newtempNameFile, out);
-                    out << headers << endl;
+                    out << "Representative_Sequence\ttotal" << endl;
                     out.close();
                     m->appendFiles(tempNameFile, newtempNameFile);
                     m->mothurRemove(tempNameFile);
@@ -671,7 +675,7 @@ int SplitMatrix::splitNames(map<string, int>& seqGroup, int numGroups, vector<st
             ofstream out;
             string newtempNameFile = singleton + "2";
             m->openOutputFile(newtempNameFile, out);
-            out << headers << endl;
+            out << "Representative_Sequence\ttotal" << endl; 
             out.close();
             m->appendFiles(singleton, newtempNameFile);
             m->mothurRemove(singleton);