X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitgroupscommand.h;h=b251fe55bc4fd010582c82297e8b757a0f17113e;hb=55bbd10379db27def51cec72a8819d775f73e45b;hp=a6b8854752f406a2bcaf82d5094c9abe023c2a46;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/splitgroupscommand.h b/splitgroupscommand.h
index a6b8854..b251fe5 100644
--- a/splitgroupscommand.h
+++ b/splitgroupscommand.h
@@ -30,7 +30,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "split.group";				}
 	string getCommandCategory()		{ return "Sequence Processing";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Split.group"; }
 	string getDescription()		{ return "split a name or fasta file by group"; }
 
@@ -41,9 +43,12 @@ public:
 private:
 	vector<string> outputNames;
 		
-	string outputDir, namefile, groupfile, groups, fastafile;
+	string outputDir, namefile, groupfile, countfile, groups, fastafile;
 	vector<string> Groups;
 	bool abort;
+    
+    int runNameGroup();
+    int runCount();
 };
 
 /***************************************************************************************/