X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitgroupscommand.cpp;fp=splitgroupscommand.cpp;h=00d9a9dc17b710467559bf598c988426ef5f3099;hb=19fcbbdba99658f5eca244803280f9ee7f9f6607;hp=6dd6206084fbe7ea81b9ad254ac2aedf28031407;hpb=65b6a38d00b3a72021611211e7c25392022c69ed;p=mothur.git

diff --git a/splitgroupscommand.cpp b/splitgroupscommand.cpp
index 6dd6206..00d9a9d 100644
--- a/splitgroupscommand.cpp
+++ b/splitgroupscommand.cpp
@@ -174,7 +174,7 @@ int SplitGroupCommand::execute(){
 		
 		delete groupMap;
 		
-		if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	remove(outputNames[i].c_str());	} return 0; }
+		if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	m->mothurRemove(outputNames[i]);	} return 0; }
 		
 		string current = "";
 		itTypes = outputTypes.find("fasta");
@@ -328,7 +328,7 @@ int SplitGroupCommand::splitFasta() {
 		//remove blank files
 		for (int i = 0; i < outputNames.size(); i++) {
 			if (m->isBlank(outputNames[i])) {
-				remove(outputNames[i].c_str());
+				m->mothurRemove(outputNames[i]);
 			}else { newOutputNames.push_back(outputNames[i]); }
 		}
 		outputNames = newOutputNames;