X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=splitabundcommand.h;h=232c36ba36763dcdb325fb9f8404d537e92450a6;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hp=df5bd55305a502803a8c1bfe36f24d60474061bb;hpb=e4c80376cc4533f66c8dfc18f3e1a86a60ac17fe;p=mothur.git

diff --git a/splitabundcommand.h b/splitabundcommand.h
index df5bd55..232c36b 100644
--- a/splitabundcommand.h
+++ b/splitabundcommand.h
@@ -21,6 +21,7 @@ also allow an option where a user can give a group file with the list or names f
 #include "groupmap.h"
 #include "inputdata.h"
 #include "listvector.hpp"
+#include "sequence.hpp"
 
 /***************************************************************************************/
 
@@ -28,16 +29,25 @@ class SplitAbundCommand : public Command {
 	
 public:
 	SplitAbundCommand(string);	
+	SplitAbundCommand();
 	~SplitAbundCommand();
-	int execute();	
-	void help();
-
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "split.abund";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getOutputFileNameTag(string, string);
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Split.abund"; }
+	string getDescription()		{ return "split a list, name, group or fasta file based on abundance"; }
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 	int splitList(ListVector*);
 	int splitNames(); //namefile
 	int writeNames(); 
-	int writeList(ListVector*); 
+	int writeList(ListVector*, string); 
 	int writeAccnos(string); 
 	int parseGroup(string); 
 	int parseFasta(string);