X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sphinx%2Findex.rst;h=e6a7bc989ad037e2dcb0bab7f8cac260828ebd4e;hb=3e19a6d20f377dacc4431c4d14fe32064feadcfb;hp=3f1286a15806cea5879b849a60000477dea9d9c1;hpb=3490bafac7bc71fb5270155358906bd971715540;p=neurodebian.git diff --git a/sphinx/index.rst b/sphinx/index.rst index 3f1286a..e6a7bc9 100644 --- a/sphinx/index.rst +++ b/sphinx/index.rst @@ -7,27 +7,27 @@ .. quotes:: :random: 1 -The NeuroDebian project provides a turnkey platform for neuroscience -through integrating of related software within the Debian_ operating -system. If you are using neuroscience-related software which -comes with you installation of Debian_ or its derivative, such as -Ubuntu_, good chance is that you are already *using NeuroDebian*. - -This website provides an additional repository with both unofficial -or prospective packages which are not (yet) available from the main -Debian_ archive, as well as backported or simply rebuilt newest -versions of packages. Please see the :ref:`faq` for more information -about the goals of this project, and :ref:`read what people say about -it `. Take a look at the :ref:`list of our current and -planned projects ` if you want to get involved. If you -appreciate this service, please |spread|. - -.. note:: - - This service is provided "as is". There is no guarantee that a package - works as expected, so use them at your own risk. If you encounter problems, - please `report <#contacts>`_ them. - +NeuroDebian provides a turnkey software platform for neuroscience +that is created by integrating research tools with the Debian_ operating +system. If you are using such software on Debian_ or its derivatives, +such as Ubuntu_, chances are that you are already using NeuroDebian. + +This website provides a :ref:`supplementary repository ` with +both unofficial or prospective packages which are not (yet) available from the +main Debian_ archive, as well as backported or simply rebuilt latest versions +of software. NeuroDebian serves as an "upstream" to some :ref:`derivative +` projects. Please see the :ref:`faq` for more information +about the goals of this project, and :ref:`read what people say about it +`. Take a look at the :ref:`list of our current and planned +projects ` if you want to get involved. This service is provided "as +is". There is no guarantee that a package works as expected, so use them at +your own risk. If you encounter problems, please `report <#contacts>`_ them. +Please help us |spread|: + + Halchenko, Y. O. & Hanke, M. (2012). `Open is not enough. Let’s take the + next step: An integrated, community-driven computing platform for neuroscience + `_. + *Frontiers in Neuroinformatics*, 6:22. .. raw:: html @@ -37,6 +37,7 @@ appreciate this service, please |spread|. +

@@ -74,7 +75,7 @@ How to use this repository ========================== To enable the NeuroDebian repository on your system, select your Debian or -Ubuntu release and a repository mirror from the lists below. Upon selection +Ubuntu release and a `repository mirror`_ from the lists below. Upon selection a short command snippet will be displayed that can be copied and pasted into a terminal session. These commands will configure the system package manager with the NeuroDebian repository key and package source information. @@ -96,12 +97,12 @@ the terminal you can use :command:`apt-get`:: .. raw:: html -

+

Popularity Contest ------------------ -We would strongly encourage you to participate in the `popularity +We encourage you to participate in the `popularity contest `_ (popcon), which anonymously collects the list of packages you installed/use on your system. Collecting such statistics is of particular importance for research @@ -162,21 +163,21 @@ hardware architecture and then simply add |repos|. The team ======== -Our main goal is to provide neuroscience FOSS_ for Debian_. Thus the -whole project would not be possible without the work of over 3,000 -Debian_ developers and contributors who are as enthusiastically pursuing -a similar goal. To add our share -- Debian_ packages of FOSS_ for -neuroscience research -- the `Experimental Psychology Debian packaging -project `_ was created -to formally join the forces of +`Michael Hanke `_ and `Yaroslav Halchenko +`_ originally started NeuroDebian (formerly the +`Experimental Psychology Debian packaging project +`_) and are the current project +leaders. However, the whole project would not be possible without the work of +over 3,000 Debian_ developers and contributors who are as enthusiastically +building the Debian operating system. +A number of packages that are available from the NeuroDebian repository have +been contributed by various individuals and other teams in Debian, such as +`Debian Med`_ and `Debian Science`_. We want to express our gratitude to all +maintainers_ that help to make Debian_ the ultimate software platform for +neuroscience. -* `Michael Hanke `_ -* `Yaroslav Halchenko `_ +.. _maintainers: pkgs.html#by-maintainer -A number of packages that are now available from the NeuroDebian repository -were not packaged by our team, but similar Debian teams. Therefore we want to -express particular gratitude to the `Debian Med`_ and `Debian Science`_ teams -for all their work. .. _support: @@ -191,7 +192,7 @@ communication channels within the NeuroDebian community * neurodebian-users_: Discussions and support of NeuroDebian users * neurodebian-upstream_: General discussions and knowledge sharing - among developers of the neuroscience software. We will also use it + among developers of neuroscience software. We also use it to update you with summaries of recent relevant developments in Debian project @@ -214,13 +215,17 @@ Thanks to the following institutions and individuals for hosting a mirror: * `Department of Psychological and Brain Sciences at Dartmouth College`_ *[us-nh]* (primary mirror) * `Department of Experimental Psychology at the University of Magdeburg`_ - *[de]* + *[de-md]* * `Neurobot at Aristotle University of Thessaloniki, Greece`_ *[gr]* * `Paul Ivanov`_ *[us-ca]* * `Medical-image Analysis and Statistical Interpretation lab at Vanderbilt`_ *[us-tn]* * `Australia's research and education network (AARNET) `_ *[au]* +* Kiyotaka Nemoto (AKA Mr. Lin4Neuro_) *[jp]* +* Iaroslav Iurchenko *[ua]* +* `Nikolaus Valentin Haenel`_ *[de-v]* +* `INCF G-Node at Ludwig-Maximilians-Universität München `_ *[de-m]* If your are interested in mirroring the repository, please see the :ref:`faq`. @@ -229,11 +234,45 @@ If your are interested in mirroring the repository, please see the :ref:`faq`. .. _Neurobot at Aristotle University of Thessaloniki, Greece: http://neurobot.bio.auth.gr .. _Paul Ivanov: http://www.pirsquared.org .. _Medical-image Analysis and Statistical Interpretation lab at Vanderbilt: https://masi.vuse.vanderbilt.edu +.. _Nikolaus Valentin Haenel: http://haenel.co Publications ============ +Hanke, M. (2012). `Share your tools! But fear the wombat! Seriously. +`_ *Talk +given at* `Brainhack `_ 2012 at the +Max-Planck-Institute for Human Cognitive and Brain Sciences*, Leipzig, Germany. +[`video `_] + +Hanke, M. (2012). `Computational and cognitive neuroscience boosted by Debian +OR Just using Debian is not enough +`_. +Talk given at the workshop "Debian for Scientific Facilities Days" at the +European Synchrotron Radiation Facility (ESRF), Grenoble, France. + +Halchenko, Y. O. & Hanke, M. (2012). `Open is not enough. Let’s take the +next step: An integrated, community-driven computing platform for neuroscience +`_. *Frontiers in Neuroinformatics*, +6:22. + +Hanke, M. (2012). `The why and how of getting packaged +<_files/Hanke_GetPackaged_CodeJam5_2012.pdf>`_. +*Talk given at BrainScaleS CodeJam 5, Convergence in Computational Neuroscience*, +University of Edinburgh, Edinburgh, UK. + +Halchenko, Y. O. & Hanke, M. (2012). `Environments for efficient +contemporary research in neuroimaging: PyMVPA and NeuroDebian +<_files/HalchenkoHanke_ContemporaryNeuroimaging_PENN2012.pdf>`_. +*Talk given at the University of Pennsylvania School of Medicine*, +Philadelphia, PA, USA. + +Hanke, M. (2012). `Rock solid, brand new, everyday, for free, not a joke: +NeuroDebian <_files/Hanke_NeuroDebian_MPI2012.pdf>`_. +*Talk given at the Max-Planck-Institute for Human Cognitive and Brain +Sciences*, Leipzig, Germany. + Hanke, M. (2011). `More than batteries included: NeuroDebian <_files/Hanke_NeuroDebian_EuroSciPy2011.pdf>`_. *Talk given at the Python in Neuroscience satellite of EuroScipy 2011*, @@ -301,6 +340,7 @@ efficient, more open, and more fun photoalbum projects testimonials + testimonials-topics .. probably should be purged altogether .. toctree::