X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sphinx%2Findex.rst;h=783020fd6157f77325f9164e5880bba9c1ac512c;hb=HEAD;hp=55494d264a6cfbf0458c238ede447ef9497454af;hpb=357e7775bf11bcc1f21e9b91f390cf217a2e8d84;p=neurodebian.git diff --git a/sphinx/index.rst b/sphinx/index.rst index 55494d2..783020f 100644 --- a/sphinx/index.rst +++ b/sphinx/index.rst @@ -6,11 +6,12 @@ NeuroDebian provides a large collection of popular neuroscience research software for the Debian_ operating system as well as Ubuntu_ and other -derivatives. Popular packages include FSL, Freesurfer, AFNI, PyMVPA and +derivatives. Popular packages include :ref:`AFNI `, +:ref:`FSL `, :ref:`PyMVPA ` and :ref:`many others `. While we do strive to maintain a high level of quality, we make no guarantee that a given package works as expected, so use -them at your own risk. If you do encounter problems or would just like to thank -us, simply `send us an email <#contacts>`_. +them at your own risk. If you do encounter problems or you just like to say +thanks, simply :ref:`send us an email `. Learn more about NeuroDebian, the goals of this project, and help us |spread|! @@ -21,7 +22,7 @@ Learn more about NeuroDebian, the goals of this project, and help us |spread|! .. raw:: html -
more publications
+
more publications
@@ -33,7 +34,7 @@ Learn more about NeuroDebian, the goals of this project, and help us |spread|! .. raw:: html -
more testimonials
+
more testimonials
.. _Ubuntu: http://www.ubuntu.com @@ -43,120 +44,7 @@ Learn more about NeuroDebian, the goals of this project, and help us |spread|! Get NeuroDebian =============== -First select what kind of operating system you are using, and then choose a -download server close to you: - -.. include:: sources_lists - -.. raw:: html - -
- This form requires javascript. If disabled, incomplete instructions are - displayed below
-
-
- Instructions for Debian-derived systems -
-

Select desired components:
- - - - - -
only software with guaranteed freedoms
- all packages are - DSFG-compliant, - with permission to use, modify, re-distribute under any condition
all software
- - individual packages may have restrictive licenses and you are required to - check license-compliance manually -
-

- -You can enable NeuroDebian on your system by simply copying and pasting the -following two commands into a terminal window. This will add the NeuroDebian -repository to your native package management system, and you will be able to -install neuroscience software the same way as any other package. - -.. raw:: html - - 
-  After selecting a release the setup code will be shown here.
-
- -Now you can update the package index and you are ready to install packages. -Of course you can use your favorite package manager (e.g. synaptic, adept) -for this. In the terminal you can use :command:`apt-get`:: - - sudo apt-get update - sudo apt-get install mricron - -You are ready to go -- enjoy NeuroDebian! - -.. note:: - - Not every package is available for all distributions/releases. For information - about which package version is available for which release and architecture, - please have a look at the corresponding package pages. - -.. raw:: html - -
-
- -
-
- Instructions for non-Debian systems -
- -For all non-Debian operating systems we recommend to deploy NeuroDebian as a -`virtual appliance`_ (virtual machine) -- this will only take a few minutes. -On all modern hardware (built within -the last 3-4 years) a virtual appliance is a convenient solution to run -NeuroDebian simultaneously with the primary operating system -- without -noticeable performance loss. To start using NeuroDebian: - -1. Download this image file: - -.. raw:: html - - - -2. Import this image into VirtualBox_. If you do not have VirtualBox_ - installed yet, visit the `VirtualBox download page - `_ and get an installer for your - system (installers for Windows, Linux, Mac and Solaris are available). - -3. Finish the configuration by following :ref:`the instructions on setting up - the virtual appliance `. `[Virtual machine - setup video tutorial] `_ - - - - -You are ready to go -- enjoy NeuroDebian! - -.. note:: - - If you still running an older VirtualBox 3.x, download one of the image files - listed below. These older releases are distributed as a `zip` file. Please - extract all files from the `.zip` file, using appropriate software - for your operating system. - - * `NeuroDebian 6.0.2 image (32bit) - `_ [~545MB] - - * `NeuroDebian 6.0.2 image (64bit) - `_ [~560MB] - -.. raw:: html - -
- -.. _virtual appliance: http://en.wikipedia.org/wiki/Virtual_appliance -.. _VirtualBox: http://www.virtualbox.org +.. include:: reposetup.rst .. _news: @@ -165,15 +53,14 @@ News .. raw:: html - -
- + + +
The news widget requires javascript
@@ -186,13 +73,21 @@ News
+ + + + + + +   * **About** -* :ref:`Team ` -* :ref:`chap_popularity` +* :ref:`The Team ` * :ref:`FAQ ` * :ref:`Blog ` +* :ref:`chap_popularity` * :ref:`chap_publications` +* :ref:`chap_acknowledgements` * :ref:`testimonials` * :ref:`coffeeart` @@ -200,12 +95,14 @@ News * **Services** * :ref:`Software ` -* :ref:`Data ` +* :ref:`Data ` * :ref:`Appliance ` +* :ref:`Mirrors ` .. start a new list * **Community** +* :ref:`Contacts ` * :ref:`Mailing lists ` * `OpenHatch `_ * `Identi.ca `_ @@ -233,6 +130,9 @@ News blog/index faq + thanks + popularity + about pkgs spread vm @@ -266,7 +166,6 @@ News livecd quotes-nihr01 quotes-nitrc - dump .. include:: link_names.txt .. include:: substitutions.txt @@ -301,77 +200,4 @@ News $(buttonid).html("↓↓↓"); }; - function createvmdownload(rel, mir) { - var img_version = '6.0.5'; - var img_suffix; - var base_url; - var img_url; - var md5sum_url; - if (rel == 'win32') { - img_suffix = 'i386'; - } else { - img_suffix = 'amd64'; - }; - if(mir in mirrors) { - base_url = mirrors[mir] + '/vm/'; - img_url = base_url + 'NeuroDebian_' + img_version + '_' + img_suffix + '.ova'; - md5sum_url = base_url + 'MD5SUMS'; - } else { - return 'Internal error'; - }; - return '
Virtual applicance image [MD5SUM, MD5SUM.gpg]
' ; - - }; - - function createrepourl(rel, mir, comp) { - if(mir in mirrors) { - var retrepo = "wget -O- http://neuro.debian.net/lists/" + rel + "." - + mir + "." + comp + " | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list\n" - + "sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9\n"; - return retrepo; - } - - }; - - function update_by_form() { - var rel = $("#release").val(); - var mir = $("#mirror").val(); - var comp = $('input[name="components"]:checked').val(); - if (rel != '' && mir != '') { - if (rel in {'win32':'', 'win64':'', 'mac':''}) { - $('#vmimagedownload').html(createvmdownload(rel, mir)); - $('#vmsetup').slideDown(); - $('#repoconfig').slideUp(); - } else { - $('#vmsetup').slideUp(); - $('#repoconfig').slideDown(); - if (comp == undefined) { - $('#reposetup').slideUp(); - } else { - $('#code').text(createrepourl(rel, mir, comp)); - $('#reposetup').slideDown(); - } - }; - } - else - { - $('#repoconfig').slideUp(); - $('#vmsetup').slideUp(); - }; - }; - - $(document).ready(function($) { - update_by_form(); - $('#repoconfig').hide() - $('#reposetup').hide(); - $('#vmsetup').hide() - $('#release').change(update_by_form); - $('#mirror').change(update_by_form); - $('input[name=components]:radio').change(update_by_form); - }); -