X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sphinx%2Findex.rst;h=447d7a752b3ee5308d71e9fb27e9e541ba42d3aa;hb=856dd7d1998556f536b50a186b38c60363b2c590;hp=0a795562a7a51e3056e3a31b57835e6513211d12;hpb=0b49bac625515bcd4c2f914559a288e09a5a0ae8;p=neurodebian.git diff --git a/sphinx/index.rst b/sphinx/index.rst index 0a79556..447d7a7 100644 --- a/sphinx/index.rst +++ b/sphinx/index.rst @@ -13,7 +13,8 @@ or prospective packages which are not (yet) available from the main Debian_ archive, as well as backported or simply rebuilt packages also available elsewhere. Please see the :ref:`faq` for more information about the goals of this project, and :ref:`read what people say about it `. -If you appreciate this service, please |spread|. +Take a look at the :ref:`list of our current and planned projects ` if +you want to get involved. If you appreciate this service, please |spread|. .. note:: @@ -26,9 +27,11 @@ If you appreciate this service, please |spread|.

- + + +

.. _Ubuntu: http://www.ubuntu.com @@ -40,39 +43,19 @@ News .. raw:: html - - +
+ -Follow us on identi.ca_ or twitter_ to subscribe to the NeuroDebian news. +For more news and information see our :ref:`blog `. Older news items are +available on identi.ca_. Follow us on identi.ca_ (preferred) or twitter_ to +subscribe to the NeuroDebian news. .. _identi.ca: http://identi.ca/neurodebian .. _twitter: http://twitter.com/NeuroDebian @@ -84,61 +67,27 @@ Follow us on identi.ca_ or twitter_ to subscribe to the NeuroDebian news. How to use this repository ========================== -The easiest way to use this repository is to download an APT-configuration file -(`sources.list`). Simply choose your target distribution/release and download -the configuration for a mirror close to you (depending on your browser, you -might have to right-click and choose 'save as'). Once downloaded, put the file -in the `/etc/apt/sources.list.d/` directory on your system. Moving files in -this directory will require superuser privileges, therefore you should probably -download the file into a temporary directory and subsequently move it into -`/etc/apt/sources.list.d/`. APT-configurations are available for the following -releases and repository mirrors: +To enable the NeuroDebian repository on your system, select your Debian or +Ubuntu release and a repository mirror from the lists below. Upon selection +a short command snippet will be displayed that can be copied and pasted into +a terminal session. These commands will configure the system package manager +with the NeuroDebian repository key and package source information. .. include:: sources_lists -.. note:: - Thanks to the following institutions and individuals for hosting a mirror: - - * `Department of Psychological and Brain Sciences at Dartmouth College`_ - *[us-nh]* (primary mirror) - * `Department of Experimental Psychology at the University of Magdeburg`_ - *[de]* - * `Neurobot at Aristotle University of Thessaloniki, Greece`_ *[gr]* - * `Paul Ivanov`_ *[us-ca]* - * `Medical-image Analysis and Statistical Interpretation lab at Vanderbilt`_ - *[us-tn]* - - If your are interested in mirroring the repository, please see the :ref:`faq`. - -.. _Department of Psychological and Brain Sciences at Dartmouth College: http://www.dartmouth.edu/~psych -.. _Department of Experimental Psychology at the University of Magdeburg: http://apsy.gse.uni-magdeburg.de -.. _Neurobot at Aristotle University of Thessaloniki, Greece: http://neurobot.bio.auth.gr -.. _Paul Ivanov: http://www.pirsquared.org -.. _Medical-image Analysis and Statistical Interpretation lab at Vanderbilt: https://masi.vuse.vanderbilt.edu +Once this is done, you have to update the package index and you are ready to +install packages. Use your favorite package manager, e.g. synaptic, adept. In +the terminal you can use :command:`apt-get`:: -Once this is done, you have to update the package index. Use your favorite -package manager, e.g. synaptic, adept, or whatever you like. In the terminal -you can use :command:`aptitude` to achieve the same:: - - sudo aptitude update - -Now, you can proceed to install packages, e.g.:: - - sudo aptitude install lipsia + sudo apt-get update + sudo apt-get install mricron .. note:: + Not every package is available for all distributions/releases. For information about which package version is available for which release and architecture, please have a look at the corresponding package pages. -After this initial setup you probably also want to configure your package -manager to recognize the NeuroDebian archive key. With this key the package -manager can verify that packages haven't been modified and are identical with -the ones in the main NeuroDebian archive, regardless of which mirror you -downloaded them from. The NeuroDebian key id is **2649A5A9**. If you need further -help setting up package authentication, please take a look at -:ref:`corresponding FAQ `. - .. _chap_installation: @@ -191,8 +140,6 @@ were not packaged by our team, but similar Debian teams. Therefore we want to express particular gratitude to the `Debian Med`_ and `Debian Science`_ teams for all their work. -.. _FOSS: http://en.wikipedia.org/wiki/Free_and_open_source_software - .. _support: Contacts @@ -213,28 +160,67 @@ communication channels within the NeuroDebian community * neurodebian-devel_: Technical mailing list for discussions on NeuroDebian development -.. _neurodebian-users: http://lists.alioth.debian.org/mailman/listinfo/neurodebian-users -.. _neurodebian-devel: http://lists.alioth.debian.org/mailman/listinfo/neurodebian-devel -.. _neurodebian-upstream: http://lists.alioth.debian.org/mailman/listinfo/neurodebian-upstream - +You are welcome also to join #neurodebian IRC room on OFTC network if +you have quick questions or want to join a live discussion. Acknowledgements ================ -We are grateful to Jim Haxby for his continued support and :ref:`endless supply of +We are grateful to `Jim Haxby`_ for his continued support and :ref:`endless supply of Italian espresso `. +.. _Jim Haxby: http://haxbylab.dartmouth.edu/ppl/jim.html + +Thanks to the following institutions and individuals for hosting a mirror: + +* `Department of Psychological and Brain Sciences at Dartmouth College`_ + *[us-nh]* (primary mirror) +* `Department of Experimental Psychology at the University of Magdeburg`_ + *[de]* +* `Neurobot at Aristotle University of Thessaloniki, Greece`_ *[gr]* +* `Paul Ivanov`_ *[us-ca]* +* `Medical-image Analysis and Statistical Interpretation lab at Vanderbilt`_ + *[us-tn]* + +If your are interested in mirroring the repository, please see the :ref:`faq`. + +.. _Department of Psychological and Brain Sciences at Dartmouth College: http://www.dartmouth.edu/~psych +.. _Department of Experimental Psychology at the University of Magdeburg: http://apsy.gse.uni-magdeburg.de +.. _Neurobot at Aristotle University of Thessaloniki, Greece: http://neurobot.bio.auth.gr +.. _Paul Ivanov: http://www.pirsquared.org +.. _Medical-image Analysis and Statistical Interpretation lab at Vanderbilt: https://masi.vuse.vanderbilt.edu + Publications ============ +Halchenko, Y. O. (2011). `π's in Debian or Scientific Debian: NumPy, SciPy and beyond +<_files/Halchenko_EuroScipy11_3_14s_in_Debian.pdf>`_. +*Talk given at* `EuroScipy 2011 `_, +Paris, France. + +Hanke, M. & Halchenko, Y. O. (2011). `Neuroscience runs on GNU/Linux +`_. +*Frontiers in Neuroinformatics, 5:8*. + +Hanke, M., Halchenko, Y. O. & Haxby, J. V. (2011). `NeuroDebian -- versatile +platform for brain-imaging research <_files/NeuroDebian_HBM2011.png>`_ +*Poster presented at the annual meeting of the Organisation for Human Brain +Mapping*, Quebec City, Canada. + +Hanke, M. (2011). `Integrating Condor into the Debian operating system +<_files/Hanke_CondorDebianIntegration_CondorWeek2011.pdf>`_. +*Talk given at* `CondorWeek 2011 +`_, +Madison, Wisconsin, USA. + Hanke, M. & Halchenko, Y. O. (2010). :ref:`Report from the Debian booth at SfN2010 `. *Annual meeting of the Society for Neuroscience*, San Diego, USA. Halchenko, Y. O., Hanke, M., Haxby, J. V., Pollmann, S. & Raizada, R. D. (2010). `Having trouble getting your Nature paper? Maybe you are not using the -right tools? <_files/NeuroDebian_SfN2010.png>`_ *Poster to be presented at the +right tools? <_files/NeuroDebian_SfN2010.png>`_ *Poster presented at the annual meeting of the Society for Neuroscience*, San Diego, USA. Hanke, M., Halchenko, Y. O. (2010). `Debian: The ultimate platform for @@ -261,24 +247,27 @@ efficient, more open, and more fun .. toctree:: :hidden: + blog/index faq pkgs spread vm coffeeart photoalbum + projects testimonials .. probably should be purged altogether .. toctree:: :hidden: + booth_sfn2010 datasets livecd - vm_welcome quotes-nihr01 quotes-nitrc - + sources_lists + vm_welcome .. include:: link_names.txt .. include:: substitutions.txt