X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sphinx%2Findex.rst;h=1f57ce07adecfbdd7b943fd6ec6a2f408ca7e762;hb=890e88a77289fcd5f781bbcbd1e5424dd3ac5069;hp=718e1b7aaefcd72d4b188bf47a8bc4d5f587e174;hpb=ca2f4e453bdc4267891d4cda5174dbf597fead3d;p=neurodebian.git diff --git a/sphinx/index.rst b/sphinx/index.rst index 718e1b7..1f57ce0 100644 --- a/sphinx/index.rst +++ b/sphinx/index.rst @@ -7,10 +7,10 @@ NeuroDebian provides a large collection of popular neuroscience research software for the Debian_ operating system as well as Ubuntu_ and other derivatives. Popular packages include FSL, Freesurfer, AFNI, PyMVPA and -:ref:`many others `. While we do strive to maintain a high level of +:ref:`many others `. While we do strive to maintain a high level of quality, we make no guarantee that a given package works as expected, so use -them at your own risk. If you do encounter problems or would just like to thank -us, simply `send us an email <#contacts>`_. +them at your own risk. If you do encounter problems or you just like to say +thanks, simply :ref:`send us an email `. Learn more about NeuroDebian, the goals of this project, and help us |spread|! @@ -43,104 +43,7 @@ Learn more about NeuroDebian, the goals of this project, and help us |spread|! Get NeuroDebian =============== -First select what kind of operating system you are using, and then choose a -download server close to you: - -.. include:: sources_lists - -.. raw:: html - -
- This form requires javascript. If disabled, incomplete instructions are - displayed below
-
-
- Instructions for Debian-derived systems -
- -You can enable NeuroDebian on your system by simply copying and pasting the -following two commands into a terminal window. This will add the NeuroDebian -repository to your native package management system, and you will be able to -install neuroscience software the same way as any other package. - -.. raw:: html - - 
-  After selecting a release the setup code will be shown here.
-
- -Now you can update the package index and you are ready to install packages. -Of course you can use your favorite package manager (e.g. synaptic, adept) -for this. In the terminal you can use :command:`apt-get`:: - - sudo apt-get update - sudo apt-get install mricron - -You are ready to go -- enjoy NeuroDebian! - -.. note:: - - Not every package is available for all distributions/releases. For information - about which package version is available for which release and architecture, - please have a look at the corresponding package pages. - -.. raw:: html - -
- -
-
- Instructions for non-Debian systems -
- -For all non-Debian operating systems we recommend to deploy NeuroDebian as a -`virtual appliance`_ (virtual machine) -- this will only take a few minutes. -On all modern hardware (built within -the last 3-4 years) a virtual appliance is a convenient solution to run -NeuroDebian simultaneously with the primary operating system -- without -noticeable performance loss. To start using NeuroDebian: - -1. Download this image file: - -.. raw:: html - - - -2. Import this image into VirtualBox_. If you do not have VirtualBox_ - installed yet, visit the `VirtualBox download page - `_ and get an installer for your - system (installers for Windows, Linux, Mac and Solaris are available). - -3. Finish the configuration by following :ref:`the instructions on setting up - the virtual appliance `. `[Virtual machine - setup video tutorial] `_ - - - - -You are ready to go -- enjoy NeuroDebian! - -.. note:: - - If you still running an older VirtualBox 3.x, download one of the image files - listed below. These older releases are distributed as a `zip` file. Please - extract all files from the `.zip` file, using appropriate software - for your operating system. - - * `NeuroDebian 6.0.2 image (32bit) - `_ [~545MB] - - * `NeuroDebian 6.0.2 image (64bit) - `_ [~560MB] - -.. raw:: html - -
- -.. _virtual appliance: http://en.wikipedia.org/wiki/Virtual_appliance -.. _VirtualBox: http://www.virtualbox.org +.. include:: reposetup.rst .. _news: @@ -172,24 +75,26 @@ News
* **About** -* :ref:`Team ` -* :ref:`chap_popularity` +* :ref:`The Team ` * :ref:`FAQ ` * :ref:`Blog ` +* :ref:`chap_popularity` * :ref:`chap_publications` +* :ref:`chap_acknowledgements` * :ref:`testimonials` * :ref:`coffeeart` .. start a new list * **Services** -* :ref:`Software ` -* :ref:`Data ` +* :ref:`Software ` +* :ref:`Data ` * :ref:`Appliance ` .. start a new list * **Community** +* :ref:`Contacts ` * :ref:`Mailing lists ` * `OpenHatch `_ * `Identi.ca `_ @@ -217,6 +122,9 @@ News blog/index faq + thanks + popularity + about pkgs spread vm @@ -226,19 +134,30 @@ News projects testimonials testimonials-topics + vm_welcome + derivatives + +.. are these supposed to be visible? +.. toctree:: + :hidden: + + machines + todo + +.. toctree:: + :hidden: + :glob: + + pkgs/* + pkglists/* .. probably should be purged altogether .. toctree:: :hidden: - booth_sfn2010 - datasets livecd quotes-nihr01 quotes-nitrc - sources_lists - vm_welcome - dump .. include:: link_names.txt .. include:: substitutions.txt @@ -273,75 +192,4 @@ News $(buttonid).html("↓↓↓"); }; - function createvmdownload(rel, mir) { - var img_version = '6.0.5'; - var img_suffix; - var base_url; - var img_url; - var md5sum_url; - if (rel == 'win32') { - img_suffix = 'i386'; - } else { - img_suffix = 'amd64'; - }; - if(mir in mirrors) { - base_url = mirrors[mir] + '/vm/'; - img_url = base_url + 'NeuroDebian_' + img_version + '_' + img_suffix + '.ova'; - md5sum_url = base_url + 'MD5SUMS'; - } else { - return 'Internal error'; - }; - return '
Virtual applicance image [MD5SUM, MD5SUM.gpg]
' ; - - }; - - function createrepourl(rel, mir) { - if(rel in rel2name && mir in mirrors) { - - var retrepo = "wget -O- http://neuro.debian.net/lists/" + rel2name[rel] + "." - + mir + " | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list\n" - + "sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9\n"; - return retrepo; - } - - }; - function updateout(rel, mir) { - if (rel != '' && mir != '') { - if (rel in {'win32':'', 'win64':'', 'mac':''}) { - $('#vmimagedownload').html(createvmdownload(rel, mir)); - $('#vmsetup').slideDown(); - $('#reposetup').slideUp(); - } else { - $('#code').text(createrepourl(rel, mir)); - $('#reposetup').slideDown(); - $('#vmsetup').slideUp(); - }; - } - else - { - $('#reposetup').slideUp(); - $('#vmsetup').slideUp(); - }; - }; - $('#release').change(function() { - var singleValues = $("#release").val(); - var mirrorVal = $("#mirror").val(); - updateout(singleValues, mirrorVal); - }); - $('#mirror').change(function() { - var singleValues = $("#release").val(); - var mirrorVal = $("#mirror").val(); - updateout(singleValues, mirrorVal); - }); - - $(document).ready(function($) { - updateout($("#release").val(), $("#mirror").val()); - }); - - $('#reposetup').hide() - $('#vmsetup').hide()